Alternatives and similar repositories for ggetrs

Users that are interested in ggetrs are comparing it to the libraries listed below

• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆62Updated 8 months ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆27Updated last month
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated last year
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆86Updated last month
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated 8 months ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated last week
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆46Updated 2 weeks ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆18Updated last year
• kcleal / superintervals
  Fast interval intersection library
  ☆40Updated 2 months ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆95Updated last week
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆30Updated 3 months ago
• COMBINE-lab / terminus
  ☆58Updated 2 years ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 10 months ago
• 10XGenomics / rust-bwa
  Rust wrapper of the BWA C API
  ☆18Updated 3 years ago
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated 5 months ago
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆15Updated 5 years ago
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆16Updated last year
• rust-bio / hts-sys
  Raw rust bindings for htslib
  ☆9Updated 3 weeks ago
• 10XGenomics / orbit
  Rust wrapper for STAR aligner
  ☆17Updated last week
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆33Updated last week
• aseyboldt / fastq-rs
  ☆51Updated 2 years ago
• rust-bio / rust-bio-types
  A library of common biomedical types.
  ☆37Updated 3 weeks ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆90Updated 2 weeks ago
• 10XGenomics / enclone
  VDJ Clonotyping & Analysis Tools
  ☆49Updated 2 months ago
• TianyiShi2001 / bioinformatics-algorithms-rs
  Bioinformatics Algorithms implemented in Rust for Learners
  ☆31Updated 3 years ago
• mfcovington / auto_barcode
  Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files
  ☆13Updated 9 years ago
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆91Updated this week
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated last month
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆20Updated last week
• COMBINE-lab / grangers
  ☆17Updated 3 months ago