noamteyssier / ggetrs
Efficient querying of biological databases
☆35Updated 2 months ago
Alternatives and similar repositories for ggetrs:
Users that are interested in ggetrs are comparing it to the libraries listed below
- Alignment-based gene expression quantification☆27Updated 2 weeks ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated 4 months ago
- ☆58Updated 2 years ago
- A high-performance BigWig and BigBed library in Rust☆81Updated 2 weeks ago
- Fast interval intersection library☆37Updated last month
- gia: Genomic Interval Arithmetic☆62Updated 8 months ago
- Raw rust bindings for htslib☆10Updated last week
- bedtools-like functionality for interval sets in rust☆51Updated 8 months ago
- A high efficiency binary format for sequencing data☆21Updated 2 weeks ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- Toolkit for manipulating FASTA and SAM files☆18Updated last year
- Single-Cell RNA-seq pseudo-aligner☆51Updated 11 months ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated last week
- ☆17Updated 2 months ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- VDJ Clonotyping & Analysis Tools☆49Updated last month
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆13Updated last week
- Rust wrapper of the BWA C API☆18Updated 3 years ago
- ☆22Updated 4 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated 3 months ago
- Rust wrapper for STAR aligner☆17Updated last week
- Rust UMI Directional Adjacency Deduplicator☆15Updated 5 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated 9 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- Rust bindings to minimap2 library☆93Updated 3 months ago
- ☆16Updated 3 months ago
- bgzip support for Rust☆16Updated last year
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Updated 9 years ago
- drunk on perbase pileups and lua expressions☆17Updated last year
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆44Updated last month