Efficient querying of biological databases
☆42Oct 27, 2025Updated 5 months ago
Alternatives and similar repositories for ggetrs
Users that are interested in ggetrs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- bioinformatics toolkit in rust☆101Feb 15, 2026Updated last month
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated 10 months ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated 11 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- 🐶 hlabud: HLA genotype analysis in R☆17Apr 11, 2025Updated 11 months ago
- ☆15Updated this week
- An efficient CLI to extract sequences from the SRA☆122Mar 4, 2026Updated 3 weeks ago
- k-mers and the like☆22Mar 2, 2026Updated 3 weeks ago
- Bitpacked sequence trait and implementation☆16Feb 27, 2026Updated last month
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 7 months ago
- Fast interval intersection library☆44Aug 20, 2025Updated 7 months ago
- A minimap2 implementation with binseq inputs☆17Dec 11, 2025Updated 3 months ago
- ☆21Dec 26, 2025Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Bit-packed and well-typed biological sequences☆46Jan 20, 2026Updated 2 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Updated this week
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 10 months ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 8 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- GBZ file format for pangenome graphs☆46Updated this week
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 6 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Parsing and evaluating gene annotation and spliced alignment☆29Jul 22, 2025Updated 8 months ago
- A high efficiency binary format for sequencing data☆98Feb 25, 2026Updated last month
- ☆57Aug 11, 2022Updated 3 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50May 22, 2024Updated last year
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 8 months ago
- A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets☆20Feb 16, 2026Updated last month
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- ☆18Dec 26, 2025Updated 3 months ago
- Fast approximate string searching☆115Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated 10 months ago
- A high-performance BigWig and BigBed library in Rust☆113Feb 13, 2026Updated last month
- Fast sequence distance estimates☆27Mar 10, 2026Updated 2 weeks ago
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26Feb 7, 2026Updated last month
- Automatically generates conversions between an enum type and any other type☆11Jan 10, 2023Updated 3 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Mar 20, 2026Updated last week