Tools for fiberseq data written in rust.
☆70Aug 29, 2026Updated this week
Alternatives and similar repositories for fibertools-rs
Users that are interested in fibertools-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆29Aug 15, 2026Updated 2 weeks ago
- bioinformatics toolkit in rust☆107Aug 16, 2026Updated 2 weeks ago
- Call select base modifications in PacBio HiFi reads☆19May 29, 2026Updated 3 months ago
- Collection of tools for the analysis of CpG data☆114Jul 9, 2025Updated last year
- ☆102Apr 22, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A battery of methylation tools for PacBio HiFi reads☆54Jul 15, 2026Updated last month
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- ☆22Aug 3, 2026Updated 3 weeks ago
- ☆32Jun 18, 2026Updated 2 months ago
- A structural variant filtering and prioritization tool for long-read sequencing data☆45Updated this week
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆87May 27, 2026Updated 3 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Open Human Genome Library☆67Dec 22, 2025Updated 8 months ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2☆23Jul 1, 2026Updated last month
- Benchmarking pairwise aligners☆37Updated this week
- Genotyping of copy number sensitive allele-specific haplotypes☆29Updated this week
- Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)☆54Aug 25, 2025Updated last year
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆28Updated this week
- A tool for sniffing out the differences in vari-Ants☆50Aug 10, 2026Updated 2 weeks ago
- an API for intersections of genomic data☆149Mar 12, 2026Updated 5 months ago
- ☆27Nov 14, 2025Updated 9 months ago
- PCA in rust☆16Jul 30, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆15Jun 29, 2026Updated 2 months ago
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Aug 7, 2026Updated 3 weeks ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆48Aug 5, 2026Updated 3 weeks ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆81Nov 4, 2025Updated 9 months ago
- ☆165Apr 13, 2026Updated 4 months ago
- Fast and exact gap-affine partial order alignment☆70Apr 25, 2026Updated 4 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last month
- Evaluating genome assemblies☆125Mar 3, 2026Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- gia: Genomic Interval Arithmetic☆68Aug 21, 2024Updated 2 years ago
- implicit pangenome graph☆110Aug 8, 2026Updated 3 weeks ago
- ☆19Jul 15, 2026Updated last month
- A complete diploid human genome☆158Aug 10, 2026Updated 2 weeks ago
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated last week
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆46Dec 18, 2025Updated 8 months ago