fiberseq / fibertools-rs
Tools for fiberseq data written in rust.
☆44Updated last month
Alternatives and similar repositories for fibertools-rs:
Users that are interested in fibertools-rs are comparing it to the libraries listed below
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆17Updated last week
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- ☆48Updated 4 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆110Updated 3 weeks ago
- an API for intersections of genomic data☆74Updated this week
- Fast and accurate coordinate conversion between assemblies☆112Updated 3 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆27Updated this week
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- ☆36Updated last month
- Simple pileup-based variant caller☆85Updated 9 months ago
- Toolkit for calling structural variants using short or long reads☆100Updated this week
- Same species annotation lift over pipeline.☆96Updated last year
- Human reference genome analysis sets☆50Updated last year
- ENCODE long read RNA-seq pipeline☆44Updated 2 years ago
- Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.☆23Updated 6 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆57Updated 3 months ago
- Error correction of ONT transcript reads☆58Updated last year
- PHAST☆71Updated last month
- ☆39Updated 8 months ago
- ☆79Updated 8 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 7 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 3 months ago
- Somatic structural variant caller for long-read data☆53Updated this week
- Predict 5mC in PacBio HiFi reads☆36Updated this week
- Tandem repeat genotyping and visualization from PacBio HiFi data☆113Updated last month
- PGR-TK: Pangenome Research Tool Kit☆96Updated 8 months ago
- Drosophila transposable element canonical sequences☆28Updated 2 years ago