fiberseq / fibertools-rs
Tools for fiberseq data written in rust.
☆44Updated this week
Alternatives and similar repositories for fibertools-rs:
Users that are interested in fibertools-rs are comparing it to the libraries listed below
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆19Updated last month
- ☆48Updated 5 months ago
- Set of tools to manipulate and visualize modified base bam files☆50Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated 2 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆58Updated 4 months ago
- Fast and accurate coordinate conversion between assemblies☆112Updated 4 months ago
- Drosophila transposable element canonical sequences☆28Updated 2 years ago
- Somatic structural variant caller for long-read data☆60Updated this week
- Simple pileup-based variant caller☆86Updated 10 months ago
- Error correction of ONT transcript reads☆59Updated last year
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆28Updated last week
- long read RNA-seq quantification☆73Updated last week
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 8 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 4 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆50Updated last month
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated 4 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆114Updated 2 weeks ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- PHAST☆72Updated 2 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 3 years ago
- Toolkit for calling structural variants using short or long reads☆100Updated 3 weeks ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- Methylation Phasing for Nanopore Sequencing☆46Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆79Updated last week
- ☆35Updated 3 weeks ago
- A list of software for pangenomics☆100Updated this week
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆73Updated 2 months ago