manzt / pygvLinks
a minimal, scriptable genome browser for python
☆53Updated last year
Alternatives and similar repositories for pygv
Users that are interested in pygv are comparing it to the libraries listed below
Sorting:
- Blazing fast toolkit to work with .hic and .cool files☆42Updated last week
- Processing and plotting tools for genomics data☆22Updated last week
- bedtools-like functionality for interval sets in rust☆55Updated 6 months ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Updated 5 years ago
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆30Updated last month
- A python package for showing JBrowse views☆26Updated 2 years ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 8 months ago
- Snakemake workflow management system and CLI generation tool☆63Updated 3 months ago
- A genome browser in your Jupyter notebook☆31Updated 9 months ago
- Fast sequencing data quality metrics☆31Updated 5 months ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆43Updated last month
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 3 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆47Updated 10 months ago
- Demonstrating best practices for bioinformatics command line tools☆25Updated 5 years ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated last week
- Variant-aware CRISPR off-target nomination☆24Updated 2 weeks ago
- vembrane filters VCF records using python expressions☆68Updated last month
- A Python library to visualize and analyze long-read transcriptomes☆65Updated 3 weeks ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆43Updated 3 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 3 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- Deep learning-based structural variant filtering method☆39Updated 2 years ago
- Interactive multiscale visualization for structural variation in human genomes☆71Updated 2 weeks ago
- expressions on VCFs☆91Updated 9 months ago
- A python package and a set of shell commands to handle GTF files☆50Updated 3 weeks ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Updated 9 months ago