Alternatives and similar repositories for pygv:

Users that are interested in pygv are comparing it to the libraries listed below

• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆29Updated last week
• vierstralab / genome-tools
  Processing and plotting tools for genomics data
  ☆20Updated last week
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆36Updated last month
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated 3 weeks ago
• cmdoret / hicreppy
  Python reimplementation of hicrep with compatibility for sparse matrices
  ☆17Updated 2 years ago
• open2c / quaich
  snakemake pipeline for Hi-C post-processing
  ☆22Updated 10 months ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆25Updated last year
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 8 months ago
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated 4 months ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated 3 weeks ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆62Updated this week
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆57Updated last week
• higlass / clodius
  Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
  ☆39Updated this week
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated last week
• nvictus / pybbi
  Python bindings to UCSC BigWig and BigBed library
  ☆33Updated 2 weeks ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆84Updated last month
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆51Updated 8 months ago
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆46Updated last month
• alevar / ORFanage
  Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…
  ☆27Updated last month
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆102Updated 11 months ago
• TheJacksonLaboratory / pyBedGraph
  A Python package for fast operations on 1-dimensional genomic signal tracks
  ☆24Updated 5 years ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆28Updated 7 months ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆42Updated 3 months ago
• vaquerizaslab / chess
  Comparison of Hi-C Experiments using Structural Similarity.
  ☆27Updated last year
• agalitsyna / fontanka
  Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …
  ☆11Updated last year
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated last week
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆36Updated 9 months ago
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆28Updated 3 weeks ago
• gagneurlab / absplice
  ☆38Updated 7 months ago
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆60Updated this week