a minimal, scriptable genome browser for python
☆53Dec 20, 2024Updated last year
Alternatives and similar repositories for pygv
Users that are interested in pygv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- bioinformatics toolkit in rust☆101Feb 15, 2026Updated last month
- Python bindings to UCSC BigWig and BigBed library☆36Mar 13, 2026Updated last week
- Blazing fast toolkit to work with .hic and .cool files☆42Mar 16, 2026Updated last week
- Oxbow makes genomic data ready for high-performance analytics.☆150Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated 11 months ago
- Genomic interval operations on Pandas DataFrames☆191Mar 2, 2026Updated 3 weeks ago
- Python wrapper for wavefront alignment using WFA2-lib☆38Nov 19, 2024Updated last year
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 3 months ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆38Dec 30, 2025Updated 2 months ago
- Architectural stripe detection from 3D genome conformation data☆18Sep 15, 2025Updated 6 months ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Extract 3D contacts (.pairs) from sequencing alignments☆128Feb 3, 2026Updated last month
- Tool for plotting sequencing data along genomic coordinates.☆336Dec 12, 2025Updated 3 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A high-performance BigWig and BigBed library in Rust☆111Feb 13, 2026Updated last month
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year
- expressions on VCFs☆91Mar 17, 2026Updated last week
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆14Nov 25, 2025Updated 4 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 3, 2022Updated 3 years ago
- Prototype your Jupyter Widget in the browser with anywidget and JupyterLite 💡☆17Apr 7, 2025Updated 11 months ago
- a cythonized, extended version of the interval search tree in bx☆30Jun 4, 2019Updated 6 years ago
- Performant Pythonic GenomicRanges☆494Jan 27, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Apr 3, 2020Updated 5 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆212Updated this week
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆73Mar 16, 2026Updated last week
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆81Oct 31, 2024Updated last year
- ☆13Nov 15, 2017Updated 8 years ago
- Simple pileup-based variant caller☆95Apr 25, 2025Updated 11 months ago
- Per-base per-nucleotide depth analysis☆149Mar 16, 2026Updated last week
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 9 months ago
- ziglang + htslib☆21Oct 31, 2021Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fast and accurate coordinate conversion between assemblies☆118Oct 9, 2025Updated 5 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- edgePython is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count data. It also include…☆49Mar 2, 2026Updated 3 weeks ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 2 months ago
- Processing and plotting tools for genomics data☆22Updated this week
- Genome browser and variant annotation☆392Oct 30, 2025Updated 4 months ago
- implicit pangenome graph☆97Mar 13, 2026Updated last week