jackh726 / bigtools
A high-performance BigWig and BigBed library in Rust
☆84Updated last month
Alternatives and similar repositories for bigtools:
Users that are interested in bigtools are comparing it to the libraries listed below
- an API for intersections of genomic data☆75Updated this week
- A Rust library and command line tool for working with genomic ranges and their data.☆102Updated 11 months ago
- bedtools-like functionality for interval sets in rust☆51Updated 8 months ago
- Fast FASTQ sample demultiplexing in Rust.☆62Updated 3 weeks ago
- gia: Genomic Interval Arithmetic☆62Updated 8 months ago
- An efficient CLI to extract sequences from the SRA☆60Updated this week
- vembrane filters VCF records using python expressions☆58Updated last week
- Per-base per-nucleotide depth analysis☆127Updated 3 months ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- long read RNA-seq quantification☆83Updated last week
- a lexicographically-based GTF/GFF sorter☆34Updated last week
- BigWig and BAM utilities☆96Updated last year
- expressions on VCFs☆83Updated 2 weeks ago
- A Python library to visualize and analyze long-read transcriptomes☆62Updated this week
- Reference genome resource manager☆76Updated last year
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated 4 months ago
- bioinformatics toolkit in rust☆88Updated last week
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆51Updated last week
- Single-cell analysis methods in Rust☆22Updated 5 months ago
- IDR☆31Updated 2 years ago
- Creating alignment plots from bam files☆57Updated last week
- A VSCode extension pack for nf-core developers.☆15Updated last month
- Grep for FASTQ files☆97Updated 3 weeks ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆20Updated 2 months ago
- Fast sequencing data quality metrics☆26Updated 3 weeks ago
- A program for the analysis of single cell nanopore long read data☆18Updated last month
- Tools for fiberseq data written in rust.☆46Updated this week
- Experimental features for Nextflow☆44Updated last month
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆67Updated this week
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated 11 months ago