jackh726 / bigtoolsLinks
A high-performance BigWig and BigBed library in Rust
☆101Updated 3 months ago
Alternatives and similar repositories for bigtools
Users that are interested in bigtools are comparing it to the libraries listed below
Sorting:
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- an API for intersections of genomic data☆75Updated this week
- bedtools-like functionality for interval sets in rust☆53Updated last month
- Fast FASTQ sample demultiplexing in Rust.☆64Updated 3 months ago
- Per-base per-nucleotide depth analysis☆137Updated last month
- Single-cell analysis methods in Rust☆26Updated 2 months ago
- An efficient CLI to extract sequences from the SRA☆112Updated last month
- long read RNA-seq quantification☆88Updated 2 weeks ago
- Grep for FASTQ files☆98Updated 5 months ago
- BigWig and BAM utilities☆97Updated last year
- gia: Genomic Interval Arithmetic☆65Updated last year
- bioinformatics toolkit in rust☆90Updated 3 months ago
- expressions on VCFs☆85Updated 4 months ago
- Command line utility for manipulating Illumina-generated FASTQ files.☆91Updated 2 weeks ago
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆78Updated last week
- a lexicographically-based GTF/GFF sorter☆36Updated 4 months ago
- Reference genome resource manager☆74Updated last year
- ☆57Updated 3 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 4 months ago
- Ultraperformant reimplementation of SICER☆57Updated 4 years ago
- The D4 Quantitative Data Format☆165Updated 4 months ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆136Updated 7 months ago
- Experimental features for Nextflow☆44Updated 3 weeks ago
- sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.☆44Updated 10 years ago
- Fast sequencing data quality metrics☆27Updated last week
- A C library for handling bigWig files☆81Updated 8 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated 3 months ago
- Efficiently read and write sequencing data from Python☆66Updated last week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Creating alignment plots from bam files☆65Updated this week