Alternatives and similar repositories for bigtools

Users that are interested in bigtools are comparing it to the libraries listed below

• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆142Updated last week
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆55Updated 6 months ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆66Updated last week
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆146Updated this week
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆120Updated last week
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆103Updated this week
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆29Updated 3 months ago
• brentp / vcfexpress
  expressions on VCFs
  ☆91Updated 9 months ago
• vollgerlab / rustybam
  bioinformatics toolkit in rust
  ☆93Updated 4 months ago
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆95Updated last week
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆139Updated 11 months ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆65Updated 3 weeks ago
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆103Updated last month
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated last month
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆38Updated 9 months ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆102Updated last year
• brentp / echtvar
  using all the bits for echt rapid variant annotation and filtering
  ☆153Updated 10 months ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆68Updated last month
• biocore-ntnu / epic2
  Ultraperformant reimplementation of SICER
  ☆58Updated 2 months ago
• COMBINE-lab / terminus
  ☆57Updated 3 years ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆66Updated last year
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆31Updated 5 months ago
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆169Updated 2 months ago
• mlafave / sam2pairwise
  sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.
  ☆44Updated 11 years ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆45Updated 2 months ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆107Updated this week
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆28Updated last year
• derijkp / scywalker
  A program for the analysis of single cell nanopore long read data
  ☆20Updated 7 months ago
• fiberseq / fibertools-rs
  Tools for fiberseq data written in rust.
  ☆63Updated last week