wang-q / intspan
Command line tools for IntSpan related bioinformatics operations
☆13Updated 2 weeks ago
Alternatives and similar repositories for intspan:
Users that are interested in intspan are comparing it to the libraries listed below
- ☆22Updated last month
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Variant call adjudication☆16Updated 7 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 9 months ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆17Updated this week
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 3 years ago
- ☆17Updated this week
- drunk on perbase pileups and lua expressions☆17Updated last year
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated last year
- Linear-time, low-memory construction of variation graphs☆18Updated 4 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Validation of sycnmers compared to minimizers☆11Updated 4 years ago
- Minimum plain text representation of kmer sets☆17Updated 4 months ago
- nimble aligner that will map your reads to the references on a laptop☆12Updated 7 years ago
- split a FASTA sequence file into shorter sequences☆10Updated 3 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- A FASTA/FASTQ format parser library☆20Updated 10 months ago
- Rust binding for WFA2-lib☆10Updated 2 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 4 months ago
- ☆12Updated 2 weeks ago
- Index and query k-mer matrices in BGZF☆12Updated 6 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆23Updated 2 weeks ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- Iterate over minimizers of a DNA sequence☆27Updated 6 months ago
- Optimal distance lower bound k-mer sampling.☆12Updated 7 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year