wang-q / intspanLinks
Command line tools for IntSpan related bioinformatics operations
☆13Updated 3 months ago
Alternatives and similar repositories for intspan
Users that are interested in intspan are comparing it to the libraries listed below
Sorting:
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 9 months ago
- Minimum plain text representation of kmer sets☆17Updated 5 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆26Updated 11 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 4 years ago
- ☆25Updated 4 years ago
- ☆22Updated 7 months ago
- nimble aligner that will map your reads to the references on a laptop☆12Updated 8 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆15Updated 4 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- A read alignment visualization library for long reads☆11Updated 2 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated 8 months ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- ☆14Updated 9 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Variant call adjudication☆16Updated last year
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆15Updated last year
- ☆17Updated 5 months ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆20Updated last week
- split a FASTA sequence file into shorter sequences☆10Updated 4 years ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆12Updated 6 years ago
- ☆17Updated this week
- drunk on perbase pileups and lua expressions☆19Updated 2 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- String algorithm visualizations☆13Updated 2 years ago
- PCA in rust☆15Updated last year