Command line tools for IntSpan related bioinformatics operations
☆12Apr 9, 2025Updated last year
Alternatives and similar repositories for intspan
Users that are interested in intspan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Updated this week
- a rust library for high throughput binary encoding of genomic sequences☆12Aug 26, 2026Updated 2 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- ☆21Dec 26, 2025Updated 10 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 7 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated 2 years ago
- bioinformatics toolkit in rust☆110Aug 16, 2026Updated 2 months ago
- ☆15Jun 29, 2021Updated 5 years ago
- indel haplotype visualization on the command line from BAM files☆12Mar 12, 2014Updated 12 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated 2 years ago
- A dotplot application for DNA/RNA sequence☆12Nov 28, 2022Updated 3 years ago
- Fast interval intersection library☆44Oct 16, 2026Updated last week
- gia: Genomic Interval Arithmetic☆69Aug 21, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆30Oct 22, 2026Updated last week
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 4 years ago
- A newly designed version of Bamsnap with Long Read Support (LRS) which inspired by bamsnap (https://github.com/parklab/bamsnap)☆14Oct 13, 2026Updated 2 weeks ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆21Jul 19, 2023Updated 3 years ago
- rust tool to choose the best read alignment between haploids to a diploid reference genome☆21Oct 20, 2026Updated last week
- bedtools-like functionality for interval sets in rust☆56Aug 5, 2025Updated last year
- ☆12Sep 14, 2026Updated last month
- somatic SV calling on matched tumor-normal co-assembly graphs☆24Aug 1, 2024Updated 2 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- ☆11Dec 18, 2025Updated 10 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- A Rust library and command line tool for working with genomic ranges and their data.☆103May 29, 2024Updated 2 years ago
- ☆19Jul 15, 2026Updated 3 months ago
- A rust-native port of wfa2lib☆14Aug 1, 2026Updated 2 months ago
- Efficient querying of biological databases☆45Oct 27, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Benchmarking pairwise aligners☆37Aug 26, 2026Updated 2 months ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Annotate non-coding regulatory vars using our GREEN-DB, prediction scores, conservation and pop AF☆21Jun 13, 2025Updated last year
- ☆10Oct 16, 2026Updated last week
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 3 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated last year