rust-bio / rust-htslibLinks
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
☆333Updated last month
Alternatives and similar repositories for rust-htslib
Users that are interested in rust-htslib are comparing it to the libraries listed below
Sorting:
- A set of command line utilities based on Rust-Bio.☆199Updated last year
- Bioinformatics I/O libraries in Rust☆620Updated last week
- Fast FASTX parsing and k-mer methods in Rust☆197Updated 2 months ago
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆129Updated last week
- The D4 Quantitative Data Format☆167Updated 5 months ago
- Randomly subsample sequencing reads or alignments☆240Updated last week
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆194Updated 2 months ago
- ☆291Updated last month
- diploid SNV caller for error-prone reads☆202Updated last year
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆522Updated this week
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Updated 3 years ago
- Read alignment statistics for metagenomics☆370Updated last month
- Per-base per-nucleotide depth analysis☆142Updated 2 weeks ago
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆289Updated 9 months ago
- using all the bits for echt rapid variant annotation and filtering☆152Updated 6 months ago
- Genome browser and variant annotation☆381Updated 2 months ago
- FASTA/FASTQ pre-processing programs☆190Updated 3 years ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆182Updated last year
- C++ API & command-line toolkit for working with BAM data☆429Updated 4 months ago
- ☆50Updated 3 years ago
- cython + htslib == fast VCF and BCF processing☆414Updated last week
- BEDOPS: high-performance genomic feature operations☆351Updated 5 months ago
- A pairwise sequence aligner written in Rust☆136Updated 2 months ago
- FASTA and FASTQ parsing in Rust☆78Updated 6 months ago
- Read-based phasing of genomic variants, also called haplotype assembly☆383Updated 3 months ago
- Nanopore sequence read simulator☆284Updated 7 months ago
- Command line utility for manipulating Illumina-generated FASTQ files.☆91Updated last month
- Align proteins to genomes with splicing and frameshift☆380Updated 2 weeks ago
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆293Updated 7 years ago
- Nanopore demultiplexing, QC and alignment pipeline☆211Updated 3 months ago