Alternatives and similar repositories for rust-htslib

Users that are interested in rust-htslib are comparing it to the libraries listed below

• rust-bio / rust-bio-tools
  A set of command line utilities based on Rust-Bio.
  ☆199Updated last year
• zaeleus / noodles
  Bioinformatics I/O libraries in Rust
  ☆609Updated last week
• onecodex / needletail
  Fast FASTX parsing and k-mer methods in Rust
  ☆195Updated last month
• varlociraptor / varlociraptor
  Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
  ☆128Updated this week
• mbhall88 / rasusa
  Randomly subsample sequencing reads or alignments
  ☆236Updated last month
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆166Updated 4 months ago
• COMBINE-lab / alevin-fry
  🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…
  ☆191Updated 3 weeks ago
• brentp / cyvcf2
  cython + htslib == fast VCF and BCF processing
  ☆411Updated 11 months ago
• smarco / WFA-paper
  Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
  ☆200Updated 3 years ago
• pcingola / SnpEff
  ☆288Updated 6 months ago
• pjedge / longshot
  diploid SNV caller for error-prone reads
  ☆203Updated last year
• lmdu / pyfastx
  a python package for fast random access to sequences from plain and gzipped FASTA/Q files
  ☆285Updated 8 months ago
• kcleal / gw
  Genome browser and variant annotation
  ☆369Updated 3 weeks ago
• sourmash-bio / sourmash
  Quickly search, compare, and analyze genomic and metagenomic data sets.
  ☆519Updated last week
• bedops / bedops
  BEDOPS: high-performance genomic feature operations
  ☆350Updated 3 months ago
• bcgsc / NanoSim
  Nanopore sequence read simulator
  ☆277Updated 5 months ago
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆137Updated 2 weeks ago
• OpenGene / AfterQC
  Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
  ☆211Updated 5 years ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆79Updated 5 months ago
• whatshap / whatshap
  Read-based phasing of genomic variants, also called haplotype assembly
  ☆379Updated 2 months ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆429Updated 8 months ago
• lh3 / miniprot
  Align proteins to genomes with splicing and frameshift
  ☆378Updated last month
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆483Updated 5 months ago
• brentp / vcfanno
  annotate a VCF with other VCFs/BEDs/tabixed files
  ☆383Updated last month
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆137Updated 6 months ago
• agordon / fastx_toolkit
  FASTA/FASTQ pre-processing programs
  ☆190Updated 3 years ago
• gpertea / stringtie
  Transcript assembly and quantification for RNA-Seq
  ☆459Updated this week
• ucscGenomeBrowser / kent
  UCSC Genome Browser source. "beta" is released version / "master" is testing.
  ☆241Updated this week
• pezmaster31 / bamtools
  C++ API & command-line toolkit for working with BAM data
  ☆428Updated 3 months ago
• Illumina / DRAGMAP
  DRAGEN open-source mapper
  ☆176Updated last year