noamteyssier / bedrsLinks
bedtools-like functionality for interval sets in rust
☆52Updated 9 months ago
Alternatives and similar repositories for bedrs
Users that are interested in bedrs are comparing it to the libraries listed below
Sorting:
- Fast FASTQ sample demultiplexing in Rust.☆62Updated last week
- gia: Genomic Interval Arithmetic☆62Updated 9 months ago
- an API for intersections of genomic data☆75Updated this week
- A high-performance BigWig and BigBed library in Rust☆90Updated last week
- An efficient CLI to extract sequences from the SRA☆101Updated this week
- Single-cell analysis methods in Rust☆22Updated 6 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- Fast sequencing data quality metrics☆26Updated this week
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 3 weeks ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated this week
- Container class to represent genomic locations and support genomic analysis☆22Updated this week
- Quality of life improvements for Bioinformatics in Python.☆29Updated this week
- Creating alignment plots from bam files☆65Updated this week
- vembrane filters VCF records using python expressions☆58Updated this week
- Reference genome resource manager☆76Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- A VSCode extension pack for nf-core developers.☆15Updated 2 months ago
- a lexicographically-based GTF/GFF sorter☆34Updated last month
- ☆21Updated 5 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆43Updated 4 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆59Updated 3 weeks ago
- expressions on VCFs☆85Updated last month
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆62Updated last month
- Snakemake profile for running jobs on an LSF cluster☆37Updated 10 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 years ago
- Rust wrapper for the next generation (still currently in C++)☆25Updated this week
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 8 months ago
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆13Updated this week
- The Zavolab Automated RNA-seq Pipeline☆35Updated 3 weeks ago