bedtools-like functionality for interval sets in rust
☆55Aug 5, 2025Updated 11 months ago
Alternatives and similar repositories for bedrs
Users that are interested in bedrs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- gia: Genomic Interval Arithmetic☆67Aug 21, 2024Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- bioinformatics toolkit in rust☆107Jul 16, 2026Updated last week
- A Rust library and command line tool for working with genomic ranges and their data.☆102May 29, 2024Updated 2 years ago
- A high-performance BigWig and BigBed library in Rust☆118Jul 6, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- an API for intersections of genomic data☆148Mar 12, 2026Updated 4 months ago
- ☆21Dec 26, 2025Updated 6 months ago
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated 2 years ago
- Bioinformatics I/O libraries in Rust☆712Updated this week
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated last week
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆45Jul 16, 2026Updated last week
- Convert vcf in parquet☆32Jan 23, 2025Updated last year
- A very fast interval tree data structure☆134Feb 3, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Rust bindings to minimap2 library☆113May 3, 2026Updated 2 months ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 7 months ago
- Efficient querying of biological databases☆45Oct 27, 2025Updated 8 months ago
- Simple and transparent support for compressed files.☆81Updated this week
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆27Jun 25, 2026Updated last month
- Fast interval intersection library☆45Jul 14, 2026Updated last week
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- Fast FASTX parsing and k-mer methods in Rust☆213Jun 22, 2026Updated last month
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated 2 weeks ago
- Fasten toolkit, for streaming operations on fastq files☆82Oct 24, 2025Updated 9 months ago
- A Rust implementation of SSHash☆19Jul 2, 2026Updated 3 weeks ago
- k-mers and the like☆23Updated this week
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆11Jun 17, 2026Updated last month
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆129Dec 30, 2020Updated 5 years ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆368Updated this week
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 6 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- ☆15Nov 30, 2023Updated 2 years ago
- horizontal pileup☆16Nov 11, 2022Updated 3 years ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Whole Genome Alignment Tools☆225Nov 6, 2025Updated 8 months ago