noamteyssier / bedrsLinks
bedtools-like functionality for interval sets in rust
☆54Updated 3 months ago
Alternatives and similar repositories for bedrs
Users that are interested in bedrs are comparing it to the libraries listed below
Sorting:
- A Rust library and command line tool for working with genomic ranges and their data.☆100Updated last year
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- A high-performance BigWig and BigBed library in Rust☆107Updated 3 weeks ago
- an API for intersections of genomic data☆73Updated last week
- gia: Genomic Interval Arithmetic☆64Updated last year
- bioinformatics toolkit in rust☆93Updated last month
- a lexicographically-based GTF/GFF sorter☆35Updated 6 months ago
- Single-cell analysis methods in Rust☆27Updated 2 weeks ago
- expressions on VCFs☆86Updated 7 months ago
- Fast sequencing data quality metrics☆30Updated 2 months ago
- Creating alignment plots from bam files☆67Updated this week
- Rust wrapper for the next generation (still currently in C++)☆28Updated 4 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 weeks ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated 2 weeks ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- long read RNA-seq quantification☆92Updated this week
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 5 months ago
- An efficient CLI to extract sequences from the SRA☆115Updated 3 weeks ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated last month
- Blazing fast toolkit to work with .hic and .cool files☆41Updated this week
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆69Updated 2 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆23Updated last week
- Container class to represent genomic locations and support genomic analysis☆25Updated last week
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- a minimal, scriptable genome browser for python☆51Updated 11 months ago
- ☆21Updated 10 months ago
- vembrane filters VCF records using python expressions☆66Updated last month
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Updated 11 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- Command line utility for working with next-generation sequencing files.☆37Updated 4 months ago