noamteyssier / bedrs
bedtools-like functionality for interval sets in rust
☆44Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for bedrs
- gia: Genomic Interval Arithmetic☆51Updated 3 months ago
- an API for intersections of genomic data☆74Updated this week
- A high-performance BigWig and BigBed library in Rust☆71Updated last week
- Fast FASTQ sample demultiplexing in Rust.☆57Updated 3 months ago
- Fast interval intersection library☆27Updated this week
- bioinformatics toolkit in rust☆78Updated 6 months ago
- a lexicographically-based GTF/GFF sorter☆28Updated 3 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆94Updated 5 months ago
- ☆19Updated last week
- vembrane filters VCF records using python expressions☆57Updated 2 months ago
- Fast sequencing data quality metrics☆17Updated this week
- Creating alignment plots from bam files☆56Updated this week
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆41Updated last month
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- Quality of life improvements for Bioinformatics in Python.☆27Updated last week
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated last year
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- crab go snap snap☆33Updated 2 weeks ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- Generate random test data for bioinformatics☆25Updated 5 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆28Updated this week
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆14Updated last month
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆27Updated last month
- Snakemake pipeline for benchmarking read mappers☆16Updated 11 months ago
- The script presents a simple way to visualize features on human chromosome ideograms☆39Updated last year
- REINDEER REad Index for abuNDancE quERy☆57Updated 3 months ago
- Deep learning-based structural variant filtering method☆35Updated last year
- A tool for projecting genomic alignments to transcriptomic coordinates☆32Updated 5 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 4 months ago