Alternatives and similar repositories for bedrs

Users that are interested in bedrs are comparing it to the libraries listed below

• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated 3 weeks ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆64Updated 3 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated last year
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆101Updated 3 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆27Updated 3 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆90Updated 2 months ago
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆26Updated 2 months ago
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated 4 months ago
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆28Updated last month
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated this week
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆111Updated last month
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 2 months ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆36Updated 4 months ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆21Updated last week
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆45Updated 2 months ago
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆59Updated 2 months ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆63Updated 3 weeks ago
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆36Updated 2 months ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆88Updated this week
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆35Updated 6 months ago
• wdecoster / kyber
  ☆21Updated 7 months ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆27Updated 10 months ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆62Updated 3 weeks ago
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆56Updated 2 years ago
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆28Updated last year
• fulcrumgenomics / fgpyo
  Quality of life improvements for Bioinformatics in Python.
  ☆30Updated 2 weeks ago
• lh3 / ref-gen
  Human reference genome analysis sets
  ☆54Updated 2 years ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆27Updated last year