bedtools-like functionality for interval sets in rust
☆56Aug 5, 2025Updated last year
Alternatives and similar repositories for bedrs
Users that are interested in bedrs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- gia: Genomic Interval Arithmetic☆69Aug 21, 2024Updated 2 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated last year
- bioinformatics toolkit in rust☆107Aug 16, 2026Updated last month
- A Rust library and command line tool for working with genomic ranges and their data.☆103May 29, 2024Updated 2 years ago
- A high-performance BigWig and BigBed library in Rust☆126Aug 14, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- an API for intersections of genomic data☆149Sep 17, 2026Updated last week
- ☆21Dec 26, 2025Updated 8 months ago
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated 2 years ago
- Bioinformatics I/O libraries in Rust☆724Updated this week
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 2 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆50Updated this week
- Convert vcf in parquet☆32Jan 23, 2025Updated last year
- A very fast interval tree data structure☆137Feb 3, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Rust bindings to minimap2 library☆113Sep 14, 2026Updated last week
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 9 months ago
- Efficient querying of biological databases☆45Oct 27, 2025Updated 10 months ago
- Simple and transparent support for compressed files.☆81Sep 9, 2026Updated 2 weeks ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Updated this week
- Fast interval intersection library☆46Jul 14, 2026Updated 2 months ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- Fast FASTX parsing and k-mer methods in Rust☆215Sep 14, 2026Updated last week
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tearing through FASTA/Q sequences☆39Jul 9, 2026Updated 2 months ago
- Fasten toolkit, for streaming operations on fastq files☆86Sep 10, 2026Updated 2 weeks ago
- A Rust implementation of SSHash☆20Aug 30, 2026Updated 3 weeks ago
- k-mers and the like☆23Aug 30, 2026Updated 3 weeks ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆12Jun 17, 2026Updated 3 months ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆131Dec 30, 2020Updated 5 years ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆373Aug 17, 2026Updated last month
- convert variation graph alignments to coverage maps over nodes☆28Jan 21, 2026Updated 8 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated 2 years ago
- ☆15Nov 30, 2023Updated 2 years ago
- horizontal pileup☆16Sep 1, 2026Updated 3 weeks ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Whole Genome Alignment Tools☆223Nov 6, 2025Updated 10 months ago