Alternatives and similar repositories for bedrs:

Users that are interested in bedrs are comparing it to the libraries listed below

• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆62Updated 8 months ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆84Updated last month
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated last week
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated 3 weeks ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆102Updated 11 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated 3 weeks ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆33Updated last week
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆60Updated this week
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆57Updated this week
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆21Updated last week
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated last week
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆22Updated 5 months ago
• wdecoster / kyber
  ☆21Updated 4 months ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• fulcrumgenomics / fgpyo
  Quality of life improvements for Bioinformatics in Python.
  ☆28Updated 2 weeks ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 3 years ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆88Updated last week
• JustinChu / ntsm
  This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…
  ☆29Updated 5 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated last week
• huangnengCSU / longcallR
  LongcallR is a small variant caller for single molecule long-read RNA-seq data
  ☆51Updated last week
• brentp / vcfexpress
  expressions on VCFs
  ☆83Updated 2 weeks ago
• Psy-Fer / blue-crab
  crab go snap snap
  ☆40Updated 2 weeks ago
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆28Updated 3 weeks ago
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆15Updated last month
• OceanGenomics / mudskipper
  A tool for projecting genomic alignments to transcriptomic coordinates
  ☆36Updated 11 months ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆32Updated last year
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆25Updated 3 months ago
• dwpeng / filterx
  process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED
  ☆22Updated 2 months ago
• BonsonW / slow5curl
  A library and tool for accessing remote BLOW5 files.
  ☆24Updated 6 months ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 2 years ago