bedtools-like functionality for interval sets in rust
☆55Aug 5, 2025Updated 8 months ago
Alternatives and similar repositories for bedrs
Users that are interested in bedrs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- bioinformatics toolkit in rust☆103Feb 15, 2026Updated 2 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year
- an API for intersections of genomic data☆149Mar 12, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A high-performance BigWig and BigBed library in Rust☆113Feb 13, 2026Updated 2 months ago
- ☆21Dec 26, 2025Updated 3 months ago
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated last year
- Bioinformatics I/O libraries in Rust☆676Updated this week
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 11 months ago
- Convert vcf in parquet☆31Jan 23, 2025Updated last year
- A very fast interval tree data structure☆131Feb 3, 2025Updated last year
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Rust bindings to minimap2 library☆110Mar 30, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Efficient querying of biological databases☆44Oct 27, 2025Updated 5 months ago
- Simple and transparent support for compressed files.☆81Feb 27, 2026Updated last month
- Fast interval intersection library☆44Aug 20, 2025Updated 7 months ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- Fast FASTX parsing and k-mer methods in Rust☆210Apr 2, 2026Updated last week
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Fasten toolkit, for streaming operations on fastq files☆81Oct 24, 2025Updated 5 months ago
- k-mers and the like☆22Apr 6, 2026Updated last week
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- A high efficiency binary format for sequencing data☆100Feb 25, 2026Updated last month
- ☆19Feb 15, 2025Updated last year
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆129Dec 30, 2020Updated 5 years ago
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆364Jan 29, 2026Updated 2 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 2 months ago
- A minimap2 implementation with binseq inputs☆17Dec 11, 2025Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆15Nov 30, 2023Updated 2 years ago
- horizontal pileup☆16Nov 11, 2022Updated 3 years ago
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆11Dec 29, 2025Updated 3 months ago
- Whole Genome Alignment Tools☆223Nov 6, 2025Updated 5 months ago
- The D4 Quantitative Data Format☆172Nov 28, 2025Updated 4 months ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆141Feb 14, 2025Updated last year