Alternatives and similar repositories for gia:

Users that are interested in gia are comparing it to the libraries listed below

• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated 8 months ago
• wdecoster / kyber
  ☆21Updated 4 months ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated this week
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆85Updated last week
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated 3 weeks ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆88Updated 2 weeks ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆61Updated this week
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆34Updated last week
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆84Updated last month
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 10 months ago
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆83Updated this week
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆62Updated 7 months ago
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 3 years ago
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆73Updated last month
• brentp / vcfexpress
  expressions on VCFs
  ☆83Updated 3 weeks ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated last month
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated last week
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆26Updated 6 months ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated last month
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆41Updated last year
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆102Updated 11 months ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆33Updated this week
• bioinf-benchmarking / mapping-benchmarking
  Snakemake pipeline for benchmarking read mappers
  ☆16Updated last year
• Psy-Fer / blue-crab
  lossless nanopore pod5 <=> s/blow5 file conversion
  ☆40Updated 3 weeks ago
• KolmogorovLab / Wakhan
  Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
  ☆49Updated this week
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated 5 months ago
• alejandrogzi / gxf2bed
  fastest GTF/GFF-to-BED converter chilling around
  ☆25Updated 3 months ago
• brentp / seqcover
  seqcover allows users to view coverage for hundreds of genes and dozens of samples
  ☆50Updated 4 years ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆50Updated last month