gia: Genomic Interval Arithmetic
☆66Aug 21, 2024Updated last year
Alternatives and similar repositories for gia
Users that are interested in gia are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 9 months ago
- bioinformatics toolkit in rust☆105Feb 15, 2026Updated 2 months ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- ☆32Feb 14, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 8 months ago
- convert variation graph alignments to coverage maps over nodes☆26Jan 21, 2026Updated 3 months ago
- plane sweep filtering genome alignments☆24Apr 18, 2026Updated 2 weeks ago
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year
- expressions on VCFs☆91Mar 17, 2026Updated last month
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- ☆102Apr 22, 2024Updated 2 years ago
- Genome browser and variant annotation☆392Apr 28, 2026Updated last week
- Rust bindings to minimap2 library☆110Mar 30, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- accurate LiftOver tool for new genome assemblies☆150Aug 8, 2024Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆32Feb 13, 2026Updated 2 months ago
- ☆22Jul 28, 2022Updated 3 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆17Updated this week
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 11 months ago
- Efficient querying of biological databases☆44Oct 27, 2025Updated 6 months ago
- k-mers and the like☆22Apr 27, 2026Updated last week
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated 2 months ago
- Whole Genome Alignment Tools☆223Nov 6, 2025Updated 6 months ago
- ☆18Jan 29, 2025Updated last year
- Per-base per-nucleotide depth analysis☆149Updated this week
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 7 months ago
- Efficient low-divergence mapping of long reads in minimizer space☆69Oct 7, 2023Updated 2 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 6 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated this week
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated last year
- an API for intersections of genomic data☆149Mar 12, 2026Updated last month
- ☆29Aug 7, 2025Updated 9 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- Functions to compare a SV call sets against a truth set.☆31Jun 18, 2025Updated 10 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆129Mar 20, 2026Updated last month
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 7 months ago