noamteyssier / gia
gia: Genomic Interval Arithmetic
☆58Updated 4 months ago
Alternatives and similar repositories for gia:
Users that are interested in gia are comparing it to the libraries listed below
- bedtools-like functionality for interval sets in rust☆49Updated 4 months ago
- ☆19Updated 2 weeks ago
- Fast FASTQ sample demultiplexing in Rust.☆58Updated last month
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 6 months ago
- an API for intersections of genomic data☆74Updated this week
- expressions on VCFs☆66Updated 3 months ago
- bioinformatics toolkit in rust☆86Updated 8 months ago
- Creating alignment plots from bam files☆56Updated this week
- Generate random test data for bioinformatics☆25Updated 7 months ago
- A high-performance BigWig and BigBed library in Rust☆73Updated this week
- a lexicographically-based GTF/GFF sorter☆29Updated 4 months ago
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated last year
- crab go snap snap☆35Updated last month
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated 3 months ago
- Snakemake workflow management system and CLI generation tool☆50Updated last month
- A FASTA/FASTQ format parser library☆20Updated 10 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆32Updated this week
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆42Updated 3 months ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 2 years ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated last year
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆36Updated this week
- PGR-TK: Pangenome Research Tool Kit☆96Updated 8 months ago
- Long-read splice alignment with high accuracy☆60Updated 3 months ago
- long read RNA-seq quantification☆73Updated this week
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 2 months ago
- drunk on perbase pileups and lua expressions☆17Updated last year
- Fasten toolkit, for streaming operations on fastq files☆77Updated this week
- vembrane filters VCF records using python expressions☆57Updated 3 months ago
- A battery of methylation tools for PacBio HiFi reads☆29Updated last month