noamteyssier / giaLinks
gia: Genomic Interval Arithmetic
☆65Updated 10 months ago
Alternatives and similar repositories for gia
Users that are interested in gia are comparing it to the libraries listed below
Sorting:
- bedtools-like functionality for interval sets in rust☆52Updated 10 months ago
- an API for intersections of genomic data☆75Updated 3 weeks ago
- bioinformatics toolkit in rust☆90Updated last month
- Fast FASTQ sample demultiplexing in Rust.☆63Updated last month
- ☆21Updated 6 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 5 months ago
- a lexicographically-based GTF/GFF sorter☆35Updated 2 months ago
- Generate random test data for bioinformatics☆26Updated last year
- expressions on VCFs☆85Updated 2 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated last month
- Fast sequencing data quality metrics☆26Updated last month
- Creating alignment plots from bam files☆65Updated last week
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated 3 weeks ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆20Updated last week
- A FASTA/FASTQ format parser library☆20Updated last year
- Rust wrapper for the next generation (still currently in C++)☆28Updated 2 weeks ago
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- sfasta☆35Updated 2 months ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Fast and exact gap-affine partial order alignment☆52Updated this week
- REINDEER REad Index for abuNDancE quERy☆58Updated last week
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last week
- Tumour-only somatic mutation calling using long reads☆27Updated 8 months ago
- Python language bindings for bwa☆10Updated last week
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆43Updated last year
- Fasten toolkit, for streaming operations on fastq files☆79Updated 3 months ago
- Long-read splice alignment with high accuracy☆63Updated 9 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆76Updated 3 months ago