RagnarGrootKoerkamp / rust-phylogeny
Rust package for constructing and analyzing phylogenies.
☆15Updated 3 years ago
Alternatives and similar repositories for rust-phylogeny:
Users that are interested in rust-phylogeny are comparing it to the libraries listed below
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆30Updated last year
- ☆17Updated this week
- ☆27Updated 10 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆24Updated 4 months ago
- ☆11Updated 2 years ago
- gia: Genomic Interval Arithmetic☆58Updated 5 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆34Updated this week
- Fast and exact gap-affine partial order alignment☆41Updated 2 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Updated 3 months ago
- A FASTA/FASTQ format parser library☆20Updated 10 months ago
- Optimal sequence-to-graph alignment with recombinations☆28Updated 3 weeks ago
- Extracting paths from assembly graphs☆22Updated 9 months ago
- Iterate over minimizers of a DNA sequence☆27Updated 6 months ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated 2 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- Statistics and analysis for variation graphs☆33Updated last month
- Generate random test data for bioinformatics☆25Updated 7 months ago
- ☆19Updated 3 weeks ago
- ☆14Updated last month
- An ultrafast and memory efficient tool for phylogenomics☆24Updated 2 months ago
- Wavefront alignment algorithm (WFA) in Golang☆30Updated 3 months ago
- convert variation graph alignments to coverage maps over nodes☆22Updated this week
- a lexicographically-based GTF/GFF sorter☆29Updated 5 months ago
- Rust wrapper for the next generation (still currently in C++)☆22Updated last week
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 6 months ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆32Updated 4 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated last year
- k-mers and the like☆20Updated this week
- base-level dotplots from PAF alignments☆23Updated 2 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 4 months ago