☆34Jan 9, 2024Updated 2 years ago
Alternatives and similar repositories for cellphonedb-data
Users that are interested in cellphonedb-data are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 3 years ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆470Jun 6, 2025Updated 10 months ago
- A tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data☆18Jan 16, 2026Updated 3 months ago
- ☆25Feb 20, 2025Updated last year
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Updated this week
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆24Jun 10, 2025Updated 10 months ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- ☆25Apr 22, 2026Updated last week
- Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.☆30Jun 10, 2025Updated 10 months ago
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆22Feb 2, 2026Updated 3 months ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Jun 7, 2025Updated 10 months ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆18Jan 2, 2024Updated 2 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆590Mar 4, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆27May 22, 2025Updated 11 months ago
- DistMap☆13Nov 23, 2021Updated 4 years ago
- Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement☆11Oct 20, 2020Updated 5 years ago
- Spatial transcriptomics of heart tissue☆28Jun 16, 2022Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆47Jun 12, 2023Updated 2 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Feb 25, 2021Updated 5 years ago
- cell type specific, trait-associated gene regulation☆30Mar 31, 2025Updated last year
- Some tools for plotting single-cell data☆178May 17, 2025Updated 11 months ago
- Join subcellular Visium HD bins into cells☆140Nov 4, 2025Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R package for easy pie charts☆17Aug 25, 2025Updated 8 months ago
- ☆211Mar 28, 2026Updated last month
- Python implementation of the Slingshot pseudotime algorithm☆75Oct 28, 2025Updated 6 months ago
- Removing empty droplets in multiome datasets☆17Jun 3, 2024Updated last year
- A toolkit for single-cell immune profiling☆369Apr 24, 2026Updated last week
- ☆10Jul 9, 2024Updated last year
- Supporting data files and code for the publication by Shilts et al.☆31Aug 28, 2022Updated 3 years ago
- ☆10Jan 24, 2021Updated 5 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆242Mar 17, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- AUCell: score single cells with gene regulatory networks☆191Mar 9, 2024Updated 2 years ago
- scover☆23Nov 3, 2023Updated 2 years ago
- Single-cell Case Control Analysis☆56Feb 26, 2026Updated 2 months ago
- Interactive visualisation of CellphoneDB results☆12Jan 15, 2025Updated last year
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆21Mar 19, 2026Updated last month