welch-lab / cytosignalLinks
☆18Updated 2 weeks ago
Alternatives and similar repositories for cytosignal
Users that are interested in cytosignal are comparing it to the libraries listed below
Sorting:
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆36Updated 5 months ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆25Updated last year
- ☆30Updated 4 months ago
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆12Updated 9 months ago
- ☆28Updated 4 months ago
- ☆11Updated last year
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆11Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆54Updated 2 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆20Updated last month
- Code for the spatial transcriptomic paper on IPF lungs☆18Updated 11 months ago
- ☆17Updated 8 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 9 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- ☆29Updated 2 months ago
- Spatial direct messaging detected by bivariate Moran☆27Updated this week
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 2 years ago
- ☆16Updated 7 months ago
- Single Cell Analysis Operations☆13Updated 4 months ago
- Profile purification of single-cell spatial transcriptomics data☆14Updated last week
- ☆27Updated last year
- ☆25Updated last month
- CAST package☆40Updated 8 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆12Updated 5 months ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆21Updated 2 years ago
- ☆37Updated 2 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 4 months ago
- scTM: A package for topic modelling in transcriptomics data☆20Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆74Updated 2 years ago
- Publically accessible code for DIISCO method☆12Updated 8 months ago