Alternatives and similar repositories for cytosignal

Users that are interested in cytosignal are comparing it to the libraries listed below

• jlaffy / scalop
  Single Cell Analysis Operations
  ☆13Updated last month
• LiHongCSBLab / SOAPy
  ☆32Updated 10 months ago
• yunguan-wang / Spacia
  ☆30Updated 8 months ago
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆53Updated last year
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆57Updated last month
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆22Updated 2 years ago
• dchary / ucdeconvolve
  UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data
  ☆26Updated 2 years ago
• wu-yc / neutrophil
  ☆16Updated 2 years ago
• kaishumason / NicheDE
  NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
  ☆23Updated 7 months ago
• YMa-lab / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆41Updated 11 months ago
• BodenmillerGroup / imcRtools
  An R package for handling and analysing imaging mass cytometry data
  ☆29Updated last week
• JinmiaoChenLab / scTM
  scTM: A package for topic modelling in transcriptomics data
  ☆24Updated last year
• bdsc-tds / SPLIT
  Profile purification of single-cell spatial transcriptomics data
  ☆26Updated 2 months ago
• Banovich-Lab / Spatial_PF
  ☆34Updated 2 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆32Updated 5 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 11 months ago
• pekjoonwu / CELINA
  ☆17Updated last year
• pachterlab / FGP_2024
  ☆14Updated 7 months ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆44Updated 3 years ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated last year
• YiLab-SC / scHolography
  ☆11Updated last year
• PansccSpat / SpatialMapESCC
  ☆24Updated last year
• kharchenkolab / scITD
  Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition
  ☆62Updated last year
• Xinyiw28 / CrossChat
  Detect hierarchical structures in cell-cell communications
  ☆16Updated 11 months ago
• hernet / transcriptional-map-nk
  We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…
  ☆14Updated last year
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆29Updated last year
• QiangShiPKU / CoVarNet
  ☆54Updated 5 months ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 3 years ago
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆65Updated 3 years ago
• liziyie / Onco-fetal-CAF-in-HCC
  ☆22Updated 2 years ago