ggirelli / iFISH-probe-design
iFISH Probe Design: a Python3 package to build iFISH probes.
☆10Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for iFISH-probe-design
- A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.☆18Updated last year
- Tools for DLO HiC data analyze☆16Updated 2 years ago
- GRiNCH: Graph-Regularized NMF and Clustering for Hi-C☆9Updated 8 months ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆13Updated this week
- Blazing fast toolkit to work with .hic and .cool files☆24Updated this week
- Pipeline for designing custom probes against human genes☆13Updated last week
- cell type specific, trait-associated gene regulation☆9Updated last month
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆14Updated last year
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 3 years ago
- ☆11Updated 3 years ago
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆15Updated 6 months ago
- ChIA-PET Utilities☆11Updated 2 years ago
- The algorithm, supervised Capacity Mapping (supCPM), to visualize scRNA-seq data☆7Updated 2 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆23Updated 2 years ago
- TF analysis from epigenetic and Hi-C data☆17Updated last week
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14Updated 6 months ago
- SIP: Significant Interaction Peak caller☆14Updated 4 months ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated last year
- R Package for phasing of single cell Strand-seq data☆10Updated 7 months ago
- ☆10Updated 2 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆19Updated 2 months ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆14Updated 2 years ago
- ☆17Updated 7 months ago
- Analyzing cellular niches in spatial transcriptomics data☆27Updated this week
- Perturb-seq analysis package☆14Updated 6 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆19Updated this week
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆21Updated last month
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated last year
- .h5mu files interface for Seurat☆26Updated 11 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆26Updated last year