ggirelli / iFISH-probe-designLinks
iFISH Probe Design: a Python3 package to build iFISH probes.
☆12Updated 3 years ago
Alternatives and similar repositories for iFISH-probe-design
Users that are interested in iFISH-probe-design are comparing it to the libraries listed below
Sorting:
- A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.☆18Updated 2 years ago
- Spatial RNA velocity☆10Updated last year
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆24Updated 3 years ago
- Single-cell Graph Cuts Optimization☆16Updated last year
- splicing and feature maps for RBPs☆25Updated 3 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated last week
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated 2 years ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated 2 weeks ago
- Tools for DLO HiC data analyze☆16Updated 3 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated last year
- ☆20Updated 4 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆42Updated 3 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.☆19Updated 9 months ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- TRUST4 manuscript evaluation☆16Updated 3 years ago
- Tools for analyzing Slide-seq data☆31Updated 2 years ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Updated 3 months ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 4 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- epigenome analysis to rank transcription factors☆15Updated 6 years ago
- ☆12Updated 5 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated 2 years ago
- scGRO-seq analyses codes☆13Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Updated 3 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Updated last year
- TF analysis from epigenetic and Hi-C data☆19Updated 10 months ago
- TCR Reconstruction Algorithm for Paired-End Single cell☆14Updated 6 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year