ggirelli / iFISH-probe-designLinks
iFISH Probe Design: a Python3 package to build iFISH probes.
☆11Updated 3 years ago
Alternatives and similar repositories for iFISH-probe-design
Users that are interested in iFISH-probe-design are comparing it to the libraries listed below
Sorting:
- A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.☆18Updated last year
- ☆13Updated last year
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated 2 years ago
- Blazing fast toolkit to work with .hic and .cool files☆29Updated last week
- Information-based dimensionality reduction☆29Updated 5 months ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆10Updated 7 months ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 6 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆25Updated 2 years ago
- One-Stop Solution to Single-Cell Multi-Omics Analysis☆7Updated last year
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆15Updated last week
- GRiNCH: Graph-Regularized NMF and Clustering for Hi-C☆9Updated last year
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Pipeline for designing custom probes against human genes☆16Updated 6 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆18Updated 2 years ago
- Single-cell Graph Cuts Optimization☆16Updated last year
- Tools for analyzing Slide-seq data☆31Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated last year
- High-performance stochastic modeling of DNA loop extrusion interactions☆17Updated 8 months ago
- ☆21Updated 2 years ago
- ☆44Updated this week
- Spatial RNA velocity☆10Updated 8 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 9 months ago
- ☆12Updated 4 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆32Updated 3 years ago
- A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.☆13Updated last month
- TF analysis from epigenetic and Hi-C data☆17Updated 2 months ago
- TRUST4 manuscript evaluation☆14Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year