Repo with analysis code for the vascular atlas paper
☆10Nov 22, 2024Updated last year
Alternatives and similar repositories for vascular_atlas
Users that are interested in vascular_atlas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Apr 11, 2024Updated 2 years ago
- ☆15Apr 27, 2022Updated 4 years ago
- ☆23Jul 15, 2025Updated last year
- http://research-pub.gene.com/IMvigor210CoreBiologies/☆12Jun 10, 2024Updated 2 years ago
- Code to reproduce analysis of Milo manuscript☆16Aug 3, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ANS_signature_scoring: A gene expression signature scoring Python package.☆20Jan 18, 2026Updated 9 months ago
- ☆12May 24, 2024Updated 2 years ago
- ☆39Jun 4, 2024Updated 2 years ago
- ☆12Aug 6, 2024Updated 2 years ago
- LD Score Regression (LDSC)☆16Dec 16, 2024Updated last year
- single cell analysis of treatment naive and treated human PDAC☆27May 27, 2022Updated 4 years ago
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- Segmentation-free Analysis of In Situ Capture data☆15Oct 7, 2026Updated 3 weeks ago
- Code required to reproduce the analysis made in Kiviaho et al. 2024☆12Nov 29, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- iterative clustering pipeline of big single cell datasets.☆41Sep 5, 2025Updated last year
- STcompare is an R package for comparing spatial gene expression patterns across spatial transcriptomics (ST) datasets☆14Oct 19, 2026Updated last week
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆36Jul 13, 2024Updated 2 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆36Jul 23, 2026Updated 3 months ago
- ☆15Feb 28, 2022Updated 4 years ago
- Gene group activity utility functions for Scanpy☆118Dec 21, 2024Updated last year
- ☆14Aug 18, 2026Updated 2 months ago
- Use hodge decomposition for trajectory analysis☆26May 11, 2026Updated 5 months ago
- ☆23Jan 11, 2026Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reproducibility of results/figures from scvi-hub paper☆15Apr 16, 2025Updated last year
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆14Oct 17, 2024Updated 2 years ago
- Code for spatial subclone paper☆19Jan 23, 2025Updated last year
- This is the official repository for the Human Cell Atlas Heart project.☆33Jul 28, 2020Updated 6 years ago
- ☆15May 1, 2026Updated 5 months ago
- Spatial transcriptomics of heart tissue☆29Jun 16, 2022Updated 4 years ago
- Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement☆11Oct 20, 2020Updated 6 years ago
- jcat (jupyter cat) is a command line tool for viewing notebook(*.ipynb) files in terminal.☆10Sep 17, 2022Updated 4 years ago
- R tools for analysis and visualization of single-cell subclustering data☆19Aug 28, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆62Aug 8, 2024Updated 2 years ago
- Removing empty droplets in multiome datasets☆17Jun 3, 2024Updated 2 years ago
- cell type specific, trait-associated gene regulation☆31Sep 8, 2026Updated last month
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆15Dec 27, 2023Updated 2 years ago
- ☆13Jul 16, 2026Updated 3 months ago
- ☆66Aug 6, 2025Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆93Mar 19, 2026Updated 7 months ago