Teichlab / vascular_atlasView external linksLinks
Repo with analysis code for the vascular atlas paper
☆10Nov 22, 2024Updated last year
Alternatives and similar repositories for vascular_atlas
Users that are interested in vascular_atlas are comparing it to the libraries listed below
Sorting:
- ☆33Jun 4, 2024Updated last year
- ☆13Apr 11, 2024Updated last year
- Segmentation-free Analysis of In Situ Capture data☆13Jan 5, 2026Updated last month
- Interactive visualisation of CellphoneDB results☆11Jan 15, 2025Updated last year
- ☆13Apr 27, 2022Updated 3 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Oct 17, 2024Updated last year
- Publically accessible code for DIISCO method☆12Oct 15, 2025Updated 4 months ago
- Code for spatial subclone paper☆16Jan 23, 2025Updated last year
- Execute command line tool from R☆20Sep 29, 2025Updated 4 months ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆31Jul 13, 2024Updated last year
- LD Score Regression (LDSC)☆15Dec 16, 2024Updated last year
- ☆15Feb 28, 2022Updated 3 years ago
- ☆54Aug 6, 2025Updated 6 months ago
- iterative clustering pipeline of big single cell datasets.☆36Sep 5, 2025Updated 5 months ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆16Jan 18, 2026Updated 3 weeks ago
- Toolbox of the Human Neural Organoid Cell Atlas☆29Updated this week
- R tools for analysis and visualization of single-cell subclustering data☆17Sep 9, 2025Updated 5 months ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆23May 16, 2025Updated 8 months ago
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆46Jan 30, 2025Updated last year
- ☆21Mar 22, 2023Updated 2 years ago
- Spatial transcriptome analysis in python☆25Jan 26, 2025Updated last year
- Detect somatic variants from tumor and normal WGS/WXS data☆19Jan 29, 2026Updated 2 weeks ago
- ☆26Apr 1, 2025Updated 10 months ago
- ☆21Mar 4, 2024Updated last year
- ☆30Jan 3, 2025Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆54Oct 31, 2024Updated last year
- Benchmark of GRNs using the GRETA pipeline☆31Feb 2, 2026Updated last week
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆30Jun 19, 2024Updated last year
- single cell analysis of treatment naive and treated human PDAC☆25May 27, 2022Updated 3 years ago
- Gene group activity utility functions for Scanpy☆100Dec 21, 2024Updated last year
- Spatial One☆30Oct 31, 2024Updated last year
- ☆30May 2, 2024Updated last year
- ☆34Nov 26, 2025Updated 2 months ago
- Integration of gut cell atlases☆34Oct 29, 2025Updated 3 months ago
- ☆16Dec 6, 2025Updated 2 months ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆28Oct 4, 2021Updated 4 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Sep 3, 2025Updated 5 months ago
- ☆30May 4, 2025Updated 9 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆81Aug 10, 2025Updated 6 months ago