Alternatives and similar repositories for ICON

Users that are interested in ICON are comparing it to the libraries listed below

• linnarsson-lab / cytograph2
  ☆15Updated 2 years ago
• friedlanderlab / mirtrace
  miRTrace
  ☆11Updated 2 years ago
• AllonKleinLab / SPRING
  ☆69Updated 7 years ago
• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆85Updated last year
• interactivereport / scRNAsequest
  scRNASequest: an ecosystem of scRNA-seq analysis, visualization and publishing. BMC Genomics 24, 228 (2023).
  ☆26Updated 4 months ago
• jishnu-lab / SLIDE
  ☆29Updated 5 months ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 7 years ago
• Teichlab / bracer
  BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
  ☆42Updated last month
• jessica1338 / CSHMM-for-time-series-scRNA-Seq
  This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data
  ☆22Updated 7 years ago
• morris-lab / Capybara
  Capybara: A computational tool to measure cell identity and fate transitions
  ☆59Updated 3 years ago
• rargelaguet / scnmt_gastrulation
  scNMT-seq gastrulation
  ☆42Updated 2 years ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆55Updated 4 years ago
• qinqian / lisa
  epigenome analysis to rank transcription factors
  ☆31Updated 2 years ago
• broadinstitute / BipolarCell2016
  ☆22Updated 5 years ago
• elimereu / matchSCore2
  ☆55Updated 4 years ago
• AllonKleinLab / SPRING_dev
  ☆71Updated last year
• hemberg-lab / scfind
  ☆43Updated 2 years ago
• maggiecrow / MetaNeighbor
  ☆48Updated 7 years ago
• wbaopaul / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆79Updated 8 months ago
• JonathanShor / DoubletDetection
  Doublet detection in single-cell RNA-seq data.
  ☆94Updated 9 months ago
• lanagarmire / SSrGE
  ☆34Updated 6 years ago
• rcannood / SCORPIUS
  Linear trajectory inference for single-cell RNA-seq
  ☆61Updated last year
• califano-lab / ARACNe-AP
  Network Reverse Engineering through AP inference of Mutual Information
  ☆86Updated 2 years ago
• cole-trapnell-lab / cicero-release
  ☆59Updated last year
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆46Updated last year
• NathanSkene / EWCE
  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
  ☆60Updated 2 weeks ago
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆45Updated last year
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆56Updated 5 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆61Updated last year