Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models
☆21Feb 2, 2026Updated last month
Alternatives and similar repositories for dreamlet
Users that are interested in dreamlet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis code and results for dreamlet☆11Jul 18, 2025Updated 8 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆30Feb 2, 2026Updated last month
- Simulation and data analysis code for dream paper☆11Jun 5, 2020Updated 5 years ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆73Mar 19, 2026Updated last week
- Quantify and interpret divers of variation in multilevel gene expression experiments☆14Mar 19, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Extended ComplexHeatmap☆11Jan 5, 2025Updated last year
- BioCarta pathway images☆11Jan 30, 2026Updated last month
- An R package for creating mirrored Manhattan plots☆18Sep 30, 2022Updated 3 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- "Dissecting cell-type composition and activity-dependent transcriptional state in mammalian brains by massively parallel single-nucleus R…☆13Jan 7, 2018Updated 8 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- gap opening realigner for BAM data streams☆18Oct 17, 2012Updated 13 years ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆35Dec 5, 2025Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Feb 28, 2023Updated 3 years ago
- Code for the paper on t-SNE with variable degree of freedom☆12Jun 27, 2019Updated 6 years ago
- Complex Heatmaps Using Base Graphics☆14Mar 20, 2026Updated last week
- Experimental design framework for scRNAseq population studies (eQTL and DE)☆45Jan 8, 2025Updated last year
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Apr 25, 2023Updated 2 years ago
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆10Jul 21, 2025Updated 8 months ago
- ☆10May 22, 2019Updated 6 years ago
- ☆14May 1, 2024Updated last year
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆61Mar 20, 2026Updated last week
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 4 years ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆13Mar 23, 2024Updated 2 years ago
- Post-verkko graph and assembly curation in Python.☆18Feb 11, 2026Updated last month
- ☆13Nov 13, 2018Updated 7 years ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆48Sep 29, 2025Updated 5 months ago
- ☆15Sep 20, 2022Updated 3 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 6 years ago
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆12Jun 11, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.☆14May 3, 2023Updated 2 years ago
- requirements, examples, and tests for expression matrix file formats☆22Sep 18, 2018Updated 7 years ago
- Create Regional Association Plots☆13Sep 7, 2025Updated 6 months ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Aug 24, 2023Updated 2 years ago
- ☆33Jan 9, 2024Updated 2 years ago
- 🎨 R package: Unified Handling of Graphics Devices☆19Dec 14, 2025Updated 3 months ago
- This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science☆16Apr 4, 2018Updated 7 years ago