Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models
☆25Sep 23, 2026Updated last month
Alternatives and similar repositories for dreamlet
Users that are interested in dreamlet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis code and results for dreamlet☆13Apr 16, 2026Updated 6 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆38Sep 23, 2026Updated last month
- Comprehensive pipeline for donor demultiplexing in single cell☆26Updated this week
- Simulation and data analysis code for dream paper☆13Jun 5, 2020Updated 6 years ago
- Helper Functions for LIBD Deconvolution☆11Sep 25, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single Cell Proteomics Data☆13Updated this week
- Quantify and interpret divers of variation in multilevel gene expression experiments☆17Sep 23, 2026Updated last month
- Reproducibility of results/figures from scvi-hub paper☆15Apr 16, 2025Updated last year
- Quantify and interpret divers of variation in multilevel gene expression experiments☆88Jul 30, 2026Updated 3 months ago
- Deep learning for single-cell Gene Regulatory Networks☆15Updated this week
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆61Aug 13, 2026Updated 2 months ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆13Apr 3, 2025Updated last year
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆32Jul 8, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated 2 years ago
- R package to process BUS files☆11Mar 18, 2026Updated 7 months ago
- A Python alternative to `clustree` for assessing single-cell RNA-sequencing clusters.☆20Mar 11, 2026Updated 7 months ago
- Mixed-effect model to test differences in cell type proportions from single-cell data, in Python☆10Aug 6, 2026Updated 2 months ago
- ☆14Jun 6, 2022Updated 4 years ago
- Code for the manuscript: Compressed phenotypic screening empowers scalable biological discovery.☆10Apr 17, 2024Updated 2 years ago
- ☆12Aug 24, 2019Updated 7 years ago
- Single-cell multi-omics integration using Optimal Transport☆56Aug 14, 2025Updated last year
- ☆11Aug 21, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Aug 9, 2022Updated 4 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆16Aug 10, 2026Updated 2 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆42Jan 11, 2025Updated last year
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated 2 years ago
- Your daily dose of doggo.☆22Sep 17, 2021Updated 5 years ago
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- STcompare is an R package for comparing spatial gene expression patterns across spatial transcriptomics (ST) datasets☆14Oct 19, 2026Updated 2 weeks ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 4 years ago
- Experimental design framework for scRNAseq population studies (eQTL and DE)☆52Jan 8, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Spatial neighbour-aware transcript cleanup for imaging-based spatial transcriptomics data (Xenium, MERSCOPE, CosMx). XeniumClean removes…☆21Jul 19, 2026Updated 3 months ago
- Code relating to http://dx.doi.org/10.2139/ssrn.4132721☆11Nov 24, 2022Updated 3 years ago
- Extended ComplexHeatmap☆12Jan 5, 2025Updated last year
- BioCarta pathway images☆11Jan 30, 2026Updated 9 months ago
- distinct: a method for differential analyses via hierarchical permutation tests☆15Sep 24, 2026Updated last month
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- Code & documentation for Multiomics and deep learning dissect regulatory syntax in human development (Liu*, Jessa*, Kim*, Ng*, et al, Nat…☆34Jul 17, 2026Updated 3 months ago