Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models
☆23May 22, 2026Updated 2 months ago
Alternatives and similar repositories for dreamlet
Users that are interested in dreamlet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis code and results for dreamlet☆11Apr 16, 2026Updated 3 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆34Jul 2, 2026Updated last month
- Simulation and data analysis code for dream paper☆13Jun 5, 2020Updated 6 years ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆84Jul 30, 2026Updated 2 weeks ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆13Apr 3, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆26Aug 4, 2026Updated last week
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated this week
- Extended ComplexHeatmap☆12Jan 5, 2025Updated last year
- Code & documentation for Multiomics and deep learning dissect regulatory syntax in human development (Liu*, Jessa*, Kim*, Ng*, et al, Nat…☆30Jul 17, 2026Updated 3 weeks ago
- BioCarta pathway images☆11Jan 30, 2026Updated 6 months ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆16Jul 14, 2026Updated last month
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆20Mar 2, 2026Updated 5 months ago
- A wrapper around the sleepwalk package that allows for interactive knn visualizations of an embedding.☆23May 8, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- An R package for creating mirrored Manhattan plots☆19Sep 30, 2022Updated 3 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Mar 20, 2026Updated 4 months ago
- "Dissecting cell-type composition and activity-dependent transcriptional state in mammalian brains by massively parallel single-nucleus R…☆13Jan 7, 2018Updated 8 years ago
- Experimental design framework for scRNAseq population studies (eQTL and DE)☆51Jan 8, 2025Updated last year
- Repository to ZIP Plink2 LD files and have random access☆17Updated this week
- Brain Analysis using Graph Theory☆12Jul 5, 2019Updated 7 years ago
- ☆15May 19, 2022Updated 4 years ago
- A Python alternative to `clustree` for assessing single-cell RNA-sequencing clusters.☆19Mar 11, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Feb 7, 2019Updated 7 years ago
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated last month
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆70Jul 28, 2026Updated 2 weeks ago
- Container class to represent genomic locations and support genomic analysis☆27Updated this week
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- ☆21Jul 30, 2024Updated 2 years ago
- A toolbox for working with Allen Human Brain Atlas microarray expression data☆14Jul 7, 2026Updated last month
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆37Jun 19, 2026Updated last month
- A modular tool for proportion analysis in single-cell sequencing data☆28Feb 26, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆39Aug 7, 2026Updated last week
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆25Feb 28, 2023Updated 3 years ago
- Single-cell differential expression☆19Apr 23, 2026Updated 3 months ago
- A DSL for layered grammar of interactive graphics in R☆23Apr 30, 2021Updated 5 years ago
- A deep model infers gene regulation networks from scRNA-seq data.☆12Jul 26, 2026Updated 2 weeks ago
- Simultaneous exploration of thousands of long-read transcriptomes by read-level indexing☆41Jun 8, 2026Updated 2 months ago