Removing empty droplets in multiome datasets
☆17Jun 3, 2024Updated last year
Alternatives and similar repositories for EmptyDropsMultiome
Users that are interested in EmptyDropsMultiome are comparing it to the libraries listed below
Sorting:
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- Single-cell analysis with non-negative matrix factorization☆48Jul 24, 2025Updated 7 months ago
- A set of files to do genomics analysis on python☆18Jun 5, 2025Updated 8 months ago
- ☆20Sep 8, 2023Updated 2 years ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆21Feb 4, 2024Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Jun 10, 2022Updated 3 years ago
- ☆33Jun 12, 2024Updated last year
- ☆31May 4, 2025Updated 9 months ago
- cell type specific, trait-associated gene regulation☆29Mar 31, 2025Updated 11 months ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 9 months ago
- An R package to analyze single-cell V(D)J data☆28Nov 13, 2023Updated 2 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated last month
- Mosaic single cell data integration using non-overlapping features☆37Sep 20, 2022Updated 3 years ago
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆10Oct 27, 2023Updated 2 years ago
- ☆10May 25, 2025Updated 9 months ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- ImageJ macro for microglia morphology analysis☆17Jan 13, 2026Updated last month
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- ☆14Mar 8, 2024Updated last year
- ☆12May 29, 2024Updated last year
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆11Jan 25, 2026Updated last month
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated 11 months ago
- R package for tissue-specific gene enrichment☆15Mar 10, 2022Updated 3 years ago
- Code and scripts used in analysis of snRNAseq cerebellar cortex atlas☆12Oct 11, 2021Updated 4 years ago
- Drug Response Estimation from single-cell Expression Profiles☆12Jan 5, 2024Updated 2 years ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆18Nov 18, 2025Updated 3 months ago
- Nextflow implementation of scAutoQC pipeline☆11Feb 21, 2026Updated last week
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆11Oct 31, 2023Updated 2 years ago
- Github repository for nanoSPLITS manuscript data and R scripts☆10Oct 11, 2024Updated last year
- Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement☆10Oct 20, 2020Updated 5 years ago
- an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression☆12Feb 26, 2024Updated 2 years ago
- ☆11Apr 11, 2023Updated 2 years ago
- Quality control plotting for long reads☆10May 14, 2024Updated last year
- Sample representation benchmark for single-cell data☆12Aug 11, 2025Updated 6 months ago
- ☆11Oct 19, 2024Updated last year
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 6 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago