Removing empty droplets in multiome datasets
☆17Jun 3, 2024Updated 2 years ago
Alternatives and similar repositories for EmptyDropsMultiome
Users that are interested in EmptyDropsMultiome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A set of files to do genomics analysis on python☆19Jun 5, 2025Updated last year
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- Fairness in single-cell data☆21Mar 25, 2026Updated 6 months ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- cell type specific, trait-associated gene regulation☆31Sep 8, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- physics-informed neural network based method for solving single-cell population dynamics☆18Sep 19, 2026Updated 3 weeks ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- ☆23Sep 8, 2023Updated 3 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- Single-cell analysis with non-negative matrix factorization☆50Jul 24, 2025Updated last year
- ☆35Jun 12, 2024Updated 2 years ago
- Relates to the article by Lioy, Cournac et al., Cell, 2018 (Functional partitioning of a bacterial chromosome through the interplay of nu…☆11Aug 19, 2020Updated 6 years ago
- Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement☆11Oct 20, 2020Updated 5 years ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆24Feb 4, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Compute mean telomere length from Whole Genome Sequencing data.☆15Feb 15, 2024Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆39Sep 20, 2022Updated 4 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Jun 10, 2022Updated 4 years ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 4 years ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆23Dec 1, 2024Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆17Sep 23, 2026Updated 2 weeks ago
- https://molecular-neurogenetics.github.io/truster/☆12Jul 14, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆26Jul 15, 2026Updated 2 months ago
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆11Oct 27, 2023Updated 2 years ago
- SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/☆23Sep 19, 2021Updated 5 years ago
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- Nextflow implementation of scAutoQC pipeline☆12Sep 30, 2026Updated last week
- Toolbox for single-cell data analysis on sample level☆28Updated this week
- End-guided RNA assembler☆15Dec 2, 2025Updated 10 months ago
- A Cloud Pipeline to Analyze Long Read Sequencing Data from Oxford Nanopore and PacBio Sequencers☆12Jan 30, 2023Updated 3 years ago
- Align sequences and then parse features.☆17Oct 24, 2025Updated 11 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package for tissue-specific gene enrichment☆16Mar 10, 2022Updated 4 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Jan 30, 2026Updated 8 months ago
- Find and decompose genomic variation sites in pangenome graphs☆17Aug 17, 2026Updated last month
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- ☆19Jul 29, 2024Updated 2 years ago
- R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions☆13Jun 25, 2024Updated 2 years ago
- ☆33May 4, 2025Updated last year