MarioniLab / EmptyDropsMultiome
Removing empty droplets in multiome datasets
☆10Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for EmptyDropsMultiome
- ☆27Updated 3 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- Inferring CNV data from single cell ATAC seq☆22Updated 9 months ago
- ☆16Updated 4 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- ☆30Updated 6 months ago
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆15Updated last year
- ☆29Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- Cluster Identity Predictor (R package implementation)☆18Updated 2 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆25Updated last month
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 weeks ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆26Updated this week
- Network construction Algorithm☆18Updated 2 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆10Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆20Updated 2 years ago
- ☆20Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆32Updated last year
- Multi-resolution Variational Inference☆22Updated last month
- ☆23Updated 3 months ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆12Updated last month
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 2 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆17Updated last year
- ☆37Updated 2 months ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆12Updated last year
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆26Updated 2 months ago
- ☆31Updated 5 years ago