MarioniLab / EmptyDropsMultiomeLinks
Removing empty droplets in multiome datasets
☆17Updated last year
Alternatives and similar repositories for EmptyDropsMultiome
Users that are interested in EmptyDropsMultiome are comparing it to the libraries listed below
Sorting:
- Functional Inference of Gene Regulation☆46Updated last year
- Using TCR and expression for sequence embedding☆58Updated 2 weeks ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated 11 months ago
- ☆80Updated last week
- Direct estimation of mean and covariance from single cell RNA seq experiments☆116Updated 4 months ago
- ☆32Updated 7 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 4 months ago
- R package for semi-supervised single-cell data integration☆88Updated 3 weeks ago
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 3 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 3 weeks ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆121Updated last month
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 7 months ago
- ☆69Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆111Updated last week
- ☆71Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 10 months ago
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆80Updated 4 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- scWGCNA☆61Updated 2 years ago
- ☆35Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- ☆17Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆74Updated last month
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- ☆21Updated last year
- single-cell clustering based on alternative splicing landscapes☆21Updated last year