MarioniLab / EmptyDropsMultiome
Removing empty droplets in multiome datasets
☆16Updated 9 months ago
Alternatives and similar repositories for EmptyDropsMultiome:
Users that are interested in EmptyDropsMultiome are comparing it to the libraries listed below
- Aligning gene expression trajectories of single-cell reference and query systems☆62Updated 5 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- ☆30Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- Functions for single cell data analysis☆31Updated 3 years ago
- Functional Inference of Gene Regulation☆41Updated 8 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆13Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- scWGCNA☆58Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆72Updated 7 months ago
- ☆33Updated 11 months ago
- ☆36Updated 6 months ago
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 10 months ago
- ☆40Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 9 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Using TCR and expression for sequence embedding☆53Updated last month
- single-cell clustering based on alternative splicing landscapes☆19Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆76Updated 7 months ago
- ☆17Updated 7 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆62Updated 2 years ago
- ☆24Updated 7 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆55Updated 4 months ago
- ☆30Updated last year
- ☆17Updated last week