Supporting data files and code for the publication by Shilts et al.
☆31Aug 28, 2022Updated 3 years ago
Alternatives and similar repositories for shilts-et-al-2022-immunoreceptors
Users that are interested in shilts-et-al-2022-immunoreceptors are comparing it to the libraries listed below
Sorting:
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆14Jul 5, 2023Updated 2 years ago
- ☆14Mar 18, 2022Updated 4 years ago
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Jan 31, 2016Updated 10 years ago
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated last year
- ☆18Apr 17, 2025Updated 11 months ago
- Load bioinformatics datasets into a local database☆11Apr 8, 2025Updated 11 months ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations f…☆13Jul 19, 2021Updated 4 years ago
- Analytical R Tools for Mass Spectrometry☆14Oct 30, 2025Updated 4 months ago
- An algorithm for classification from a graph-sparse support☆15Jan 30, 2019Updated 7 years ago
- Bucklescript bindings for XState state machine☆14Jan 13, 2019Updated 7 years ago
- ☆19Jul 17, 2024Updated last year
- ☆22Nov 9, 2023Updated 2 years ago
- RAGE-seq scripts☆18Aug 30, 2021Updated 4 years ago
- openASO is a project designed to identify regulatory regions of an RNA that can be targeted by antisense oligonucleotides.☆11Sep 30, 2021Updated 4 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- ☆33Jan 9, 2024Updated 2 years ago
- This repository contains all analysis scripts used to explore single cell datasets for: Jardine and Webb et al., 2021, "Blood and immune …☆13May 4, 2022Updated 3 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆150Jan 20, 2023Updated 3 years ago
- 月之暗面 moonshot AI nodejs SDK typescript kimi☆12Apr 13, 2024Updated last year
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- ☆12Dec 4, 2023Updated 2 years ago
- ☆63Aug 26, 2025Updated 6 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆468Jun 6, 2025Updated 9 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆101May 27, 2025Updated 9 months ago
- The SomaDataIO package loads and exports 'SomaScan' data via the 'SomaLogic Operating Co., Inc.' proprietary data file, called an ADAT ('…☆29Feb 12, 2026Updated last month
- Invariant Representation learning☆20Jun 26, 2024Updated last year
- Pipeline for automatic processing and quality control of mass spectrometry data☆13Jan 30, 2025Updated last year
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- A modern Python application packaging and distribution tool☆18Jan 7, 2026Updated 2 months ago
- Workflow to reproduce results and figures for the second BeatAML manuscript☆14Jun 28, 2022Updated 3 years ago
- Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries☆11Jan 26, 2025Updated last year
- Consensus peaks of chromatin accessibility in the human genome☆17Dec 1, 2025Updated 3 months ago
- ☆21Dec 23, 2024Updated last year
- Creates CONSORT Diagrams for RCTs☆13Jun 11, 2024Updated last year
- simplified cellranger for long-read data☆20Aug 27, 2025Updated 6 months ago
- Assembly and Annotation of the Human Immune Health Atlas☆20Aug 28, 2025Updated 6 months ago
- Python parser for ISAtab, a biological file format for experimental metadata☆16Nov 24, 2016Updated 9 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Aug 24, 2023Updated 2 years ago