gtrichard / mummer-ggplotLinks
Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.
☆11Updated 4 years ago
Alternatives and similar repositories for mummer-ggplot
Users that are interested in mummer-ggplot are comparing it to the libraries listed below
Sorting:
- parallelLastz: Running Lastz in parallel☆17Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Updated last year
- Simple tools for working with Hi-C data☆18Updated 7 years ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆19Updated 6 months ago
- ☆17Updated 2 weeks ago
- defusion☆14Updated 4 years ago
- SINE annotation tool for plant genomes☆18Updated 2 years ago
- Phasing reads with secondary alignments☆21Updated last year
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆15Updated last year
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆24Updated this week
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- Consensus genome annotation using OMA☆31Updated 3 weeks ago
- ☆10Updated last year
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Updated 3 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 4 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 3 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 9 months ago
- Set of script for the paper on the cattle graph genome☆13Updated 3 years ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Updated last week
- Scripts to do haplotype analysis on pan genomes.☆20Updated 5 years ago
- ☆12Updated 5 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 11 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 5 months ago
- A nextflow pipeline for polishing CLR assemblies☆18Updated 3 years ago
- Improved long-read assembly by preserving contained reads☆30Updated last year
- Genotyping lots of samples with big pangenomes☆11Updated 3 months ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Updated 2 years ago