kharchenkolab / cacoaLinks
Single-cell Case Control Analysis
☆52Updated 9 months ago
Alternatives and similar repositories for cacoa
Users that are interested in cacoa are comparing it to the libraries listed below
Sorting:
- ☆41Updated 4 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated last month
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- ☆32Updated 7 months ago
- scWGCNA☆61Updated 2 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 10 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- ☆29Updated 2 years ago
- ☆37Updated last year
- ☆39Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- ☆49Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago