kharchenkolab / cacoaLinks
Single-cell Case Control Analysis
☆48Updated 6 months ago
Alternatives and similar repositories for cacoa
Users that are interested in cacoa are comparing it to the libraries listed below
Sorting:
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- ☆41Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- ☆49Updated 10 months ago
- ☆41Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated 11 months ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated last month
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 7 months ago
- ☆32Updated 4 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- scRNA-seq cell type identification☆43Updated 5 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆60Updated last year
- ☆16Updated 5 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- .h5mu files interface for Seurat☆30Updated last year
- ☆32Updated 5 years ago
- ☆35Updated 2 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 3 years ago
- Mapping pipeline for snmC-seq based technologies.☆20Updated last year
- ☆23Updated 2 weeks ago
- cell type specific, trait-associated gene regulation☆26Updated 2 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year