kharchenkolab / cacoaLinks
Single-cell Case Control Analysis
☆52Updated this week
Alternatives and similar repositories for cacoa
Users that are interested in cacoa are comparing it to the libraries listed below
Sorting:
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 3 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- ☆43Updated 4 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- scWGCNA☆61Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- ☆39Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- ☆39Updated last month
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- ☆32Updated 9 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 3 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- ☆50Updated 5 years ago
- ☆29Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month
- ☆13Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago