Alternatives and similar repositories for scover

Users that are interested in scover are comparing it to the libraries listed below

• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆29Updated 4 years ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆33Updated 3 years ago
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆19Updated 6 months ago
• immunogenomics / cdr3-QTL
  Trans-association between HLA and TCR-CDR3
  ☆18Updated 2 years ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆19Updated 3 years ago
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 6 years ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆34Updated 3 years ago
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆21Updated last year
• MonashBioinformaticsPlatform / celaref
  ☆14Updated 6 years ago
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆25Updated 3 years ago
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆28Updated 3 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆38Updated 2 years ago
• salzman-lab / SICILIAN
  ☆22Updated last year
• kostkalab / vaeda
  Vaeda method for computational doublet annotation
  ☆17Updated last year
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated 2 years ago
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated 8 months ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• edsgard / scphaser
  R package for haplotype phasing using single-cell RNA-seq data
  ☆13Updated 8 years ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 6 years ago
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆29Updated 4 years ago
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated last week
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆33Updated 5 months ago
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆25Updated last year
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• csoneson / rna_velocity_quant
  Evaluation of the effect of quantification choices on RNA velocity estimates
  ☆27Updated 3 years ago
• dibbelab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆15Updated 2 years ago
• saezlab / footprints
  Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"
  ☆20Updated 7 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆45Updated 2 years ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆26Updated last year