Classify output of AmpliconArchitect to detect types of focal amplifications present
☆23Jul 22, 2026Updated 3 weeks ago
Alternatives and similar repositories for AmpliconClassifier
Users that are interested in AmpliconClassifier are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆87Jul 23, 2026Updated 3 weeks ago
- Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.☆30Oct 10, 2025Updated 10 months ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆162Jun 18, 2024Updated 2 years ago
- Micro DNA identification☆24Aug 5, 2021Updated 5 years ago
- SV clustering☆32Jul 5, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.☆13Jul 22, 2026Updated 3 weeks ago
- ☆26Dec 18, 2024Updated last year
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆14Aug 21, 2025Updated 11 months ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14Jun 18, 2026Updated last month
- ☆13Apr 16, 2026Updated 3 months ago
- ☆14Mar 28, 2025Updated last year
- Pipeline for processing of GoT-ChA genotyping data and downstream analysis☆15Mar 17, 2025Updated last year
- CoRAL: Reconstruction of focal amplifications with long reads☆31Updated this week
- ☆18Jul 13, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Main repository for Drews et al. (Nature, 2022)☆43Aug 14, 2023Updated 3 years ago
- Toolkit for single-cell copy number analysis☆35Dec 15, 2025Updated 7 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆68Jul 17, 2024Updated 2 years ago
- Repository detailing updated allowlisting and clonal analysis workflow☆11Feb 1, 2025Updated last year
- ☆28Sep 20, 2023Updated 2 years ago
- ☆13Dec 19, 2022Updated 3 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 3 years ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆35Jul 27, 2026Updated 2 weeks ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Apr 10, 2026Updated 4 months ago
- R package CoxBoost☆10Jun 22, 2026Updated last month
- ☆80Jul 12, 2023Updated 3 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- ☆17Oct 3, 2023Updated 2 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Nov 13, 2023Updated 2 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- Hi-C data analysis tool☆13May 31, 2017Updated 9 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆17Sep 16, 2023Updated 2 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated last year
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆32Mar 10, 2023Updated 3 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated 6 months ago
- ☆13Sep 24, 2025Updated 10 months ago
- ☆17Mar 12, 2021Updated 5 years ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆21Jul 1, 2026Updated last month