AmpliconSuite / AmpliconClassifierLinks
Classify output of AmpliconArchitect to detect types of focal amplifications present
☆21Updated 3 weeks ago
Alternatives and similar repositories for AmpliconClassifier
Users that are interested in AmpliconClassifier are comparing it to the libraries listed below
Sorting:
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- Micro DNA identification☆23Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.☆29Updated 3 months ago
- An R package to time somatic mutations☆65Updated 5 years ago
- RNA editing tests☆17Updated 5 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated last week
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆41Updated 2 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆57Updated 7 months ago
- single-nucleus nanopore reads processing pipeline☆16Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆53Updated 3 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22Updated last year
- A comprehensive toolkit for single-cell methylation sequencing data analysis☆30Updated this week
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆73Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 3 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆62Updated last month
- ☆82Updated 8 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- ☆33Updated last year
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆73Updated 2 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆52Updated last month
- ☆53Updated 3 years ago
- Tutorial Website☆62Updated 4 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 6 months ago