AmpliconSuite / AmpliconClassifierLinks
Classify output of AmpliconArchitect to detect types of focal amplifications present
☆21Updated 3 weeks ago
Alternatives and similar repositories for AmpliconClassifier
Users that are interested in AmpliconClassifier are comparing it to the libraries listed below
Sorting:
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆41Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆72Updated last year
- Micro DNA identification☆24Updated 4 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆75Updated last month
- An R package to time somatic mutations☆64Updated 4 years ago
- ☆39Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- RNA editing tests☆17Updated 5 years ago
- Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.☆28Updated last month
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- ☆81Updated 7 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 4 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆57Updated 2 weeks ago
- Cellsnake tool main repo☆35Updated last year
- An Optimized Nested TAD caller for Hi-C data☆25Updated 4 years ago
- A Python implementation for BH-FDR and HiCCUPS☆52Updated 7 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22Updated last year
- ☆25Updated 4 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 5 months ago
- Tutorial Website☆60Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- ☆21Updated last month
- Single cell Nanopore sequencing data for Genotype and Phenotype☆54Updated 6 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago