Alternatives and similar repositories for AmpliconClassifier

Users that are interested in AmpliconClassifier are comparing it to the libraries listed below

• gerstung-lab / MutationTimeR
  An R package to time somatic mutations
  ☆61Updated 4 years ago
• raphael-group / decifer
  DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…
  ☆20Updated last year
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆24Updated 10 months ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆41Updated last year
• wenweixiong / MARVEL
  ☆49Updated 10 months ago
• AmpliconSuite / AmpliconSuite-pipeline
  A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …
  ☆66Updated 3 weeks ago
• henssenlab / TreeShapedRearrangements
  Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
  ☆15Updated 4 years ago
• lrylaarsdam / amethyst
  An analysis toolkit for single-cell methylation sequencing data
  ☆20Updated this week
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆47Updated 10 months ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆59Updated last year
• broadinstitute / RNA_MUTECT_1.0-1
  ☆38Updated 5 years ago
• statgen / popscle
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆49Updated 4 years ago
• sinanugur / cellsnake
  Cellsnake tool main repo
  ☆34Updated last year
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 4 years ago
• LuyiTian / FLAMES
  Full-length transcriptome splicing and mutation analysis
  ☆83Updated 11 months ago
• Wedge-lab / dpclust
  Dirichlet Process based methods for subclonal reconstruction of tumours
  ☆29Updated 2 months ago
• mcgilldinglab / MATES
  A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data
  ☆27Updated last month
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆60Updated last week
• bvaldebenitom / SoloTE
  ☆32Updated 11 months ago
• lanagarmire / SSrGE
  ☆34Updated 5 years ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆43Updated 4 years ago
• ay-lab / FitHiChIP
  Statistically Significant loops from HiChIP data
  ☆43Updated last year
• WRui / Post_Implantation
  ☆27Updated 3 years ago
• maxsonBraunLab / cutTag-pipeline
  Pipeline for Cut&Tag analysis
  ☆21Updated last month
• tushiqi / MAnorm2
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆33Updated 2 years ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆77Updated 2 years ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆17Updated 4 years ago
• amf71 / cloneMap
  An R package to plot maps of clone distributions in somatic evolution
  ☆17Updated last year
• YaqiangCao / cLoops2
  Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
  ☆47Updated 2 months ago
• TRON-Bioinformatics / EasyFuse
  EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
  ☆59Updated 5 months ago