Classify output of AmpliconArchitect to detect types of focal amplifications present
☆21Mar 19, 2026Updated last month
Alternatives and similar repositories for AmpliconClassifier
Users that are interested in AmpliconClassifier are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆80Updated this week
- Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.☆29Oct 10, 2025Updated 6 months ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆159Jun 18, 2024Updated last year
- Micro DNA identification☆23Aug 5, 2021Updated 4 years ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.☆10Updated this week
- ☆26Dec 18, 2024Updated last year
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆12Aug 21, 2025Updated 8 months ago
- ☆14Mar 28, 2025Updated last year
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14Apr 6, 2026Updated 3 weeks ago
- Pipeline for processing of GoT-ChA genotyping data and downstream analysis☆15Mar 17, 2025Updated last year
- ☆17Jul 13, 2021Updated 4 years ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆32Apr 28, 2026Updated last week
- Repository detailing updated allowlisting and clonal analysis workflow☆10Feb 1, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Jul 17, 2024Updated last year
- ☆28Sep 20, 2023Updated 2 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- Toolkit for single-cell copy number analysis☆35Dec 15, 2025Updated 4 months ago
- ☆78Jul 12, 2023Updated 2 years ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆21Aug 22, 2025Updated 8 months ago
- R package CoxBoost☆10Dec 11, 2025Updated 4 months ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DriverPower☆26Jan 18, 2025Updated last year
- ☆17Oct 3, 2023Updated 2 years ago
- ☆13Dec 19, 2022Updated 3 years ago
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Apr 10, 2026Updated 3 weeks ago
- Hi-C data analysis tool☆13May 31, 2017Updated 8 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- CoRAL: Reconstruction of focal amplifications with long reads☆27Apr 16, 2026Updated 2 weeks ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Nov 13, 2023Updated 2 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆33Mar 10, 2023Updated 3 years ago
- ☆15Sep 16, 2023Updated 2 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated 3 months ago
- An R package to time somatic mutations☆69Dec 12, 2020Updated 5 years ago
- ☆11May 12, 2021Updated 4 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 2 years ago
- Cross-modal Identification of Tertiary Lymphoid Structures☆29Jun 19, 2024Updated last year