Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomic data"
☆11Jan 15, 2024Updated 2 years ago
Alternatives and similar repositories for SCORPION
Users that are interested in SCORPION are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 6 months ago
- Cell marker identification and evaluation pipeline in single cell transcriptomes.☆11Jan 9, 2025Updated last year
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks☆28Aug 16, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆65Aug 26, 2025Updated last year
- ☆15Apr 11, 2024Updated 2 years ago
- Drawing 'dendrogram' using 'ggtree'☆13Apr 29, 2026Updated 4 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- ☆17Mar 5, 2026Updated 5 months ago
- Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"☆29Jul 27, 2026Updated last month
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated last year
- ☆12Jan 8, 2026Updated 7 months ago
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆14Apr 23, 2024Updated 2 years ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆77Oct 16, 2025Updated 10 months ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 3 years ago
- Complex Heatmaps Using Base Graphics☆17Mar 29, 2026Updated 5 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- R implementation of GeneTrajectory☆71May 9, 2026Updated 3 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq at locus- or subfamily-level☆25Updated this week
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆16Jul 5, 2023Updated 3 years ago
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆15Jun 12, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Human Muscle Ageing Cell Atlas☆21Mar 8, 2024Updated 2 years ago
- ☆20Updated this week
- Various utility functions for Seurat v5 single-cell analysis☆71Updated this week
- ☆17Sep 16, 2024Updated last year
- Deconvolution of spatial transcriptomics at single-cell resolution☆22Mar 25, 2026Updated 5 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆115Updated this week
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 9 months ago
- ☆43Jan 12, 2026Updated 7 months ago
- ☆46May 4, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆54Jan 21, 2026Updated 7 months ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆21Aug 21, 2026Updated last week
- ☆19May 25, 2026Updated 3 months ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- Group Technical Effects (GTE)☆16Oct 18, 2025Updated 10 months ago
- ☆43Jun 11, 2022Updated 4 years ago
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 4 months ago