A tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data
☆19Jan 16, 2026Updated 5 months ago
Alternatives and similar repositories for scPAS
Users that are interested in scPAS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆22Jan 23, 2026Updated 5 months ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 4 months ago
- DEGAS is an R package that can be used to prioritize cells in relation to disease.☆14Nov 6, 2024Updated last year
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year
- R package for single-cell comparative regulatory analysis☆11Jun 26, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- https://relab.xidian.edu.cn/AgeAnno/#/☆15Oct 22, 2022Updated 3 years ago
- 《Linux 不入门到入门》网页：https://super9du.github.io/linux-primer/☆10Aug 7, 2022Updated 3 years ago
- ☆49Oct 29, 2025Updated 8 months ago
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆83Dec 16, 2023Updated 2 years ago
- Benchmarking pipeline for single-cell perturbation prediction tools☆34Jul 11, 2025Updated 11 months ago
- A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics st…☆24May 23, 2026Updated last month
- Single-Cell Inference of Class Switch Recombination☆23Jun 19, 2026Updated 2 weeks ago
- ☆36Jan 9, 2024Updated 2 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆28Jun 4, 2023Updated 3 years ago
- ☆10Aug 21, 2025Updated 10 months ago
- Guide to processing raw LCMS metabolomic and lipidomic data using MS-DIAL, followed by data pre-processing and secondary annotation (of m…☆25Feb 5, 2024Updated 2 years ago
- A package for reference mapping and nice visualization☆24Dec 16, 2025Updated 6 months ago
- SPAtial Transcriptomics resource for subCellular and High-throughput platforms☆23Dec 10, 2024Updated last year
- ☆13Jun 25, 2026Updated last week
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆15Mar 23, 2024Updated 2 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆20May 13, 2026Updated last month
- Automatic annotation of single-cell RNA-seq data from the literature☆48Jul 20, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Clone of the Bioconductor repository for the DropletUtils package.☆67Apr 8, 2026Updated 2 months ago
- ☆10Jul 10, 2024Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Dec 22, 2022Updated 3 years ago
- ☆43Nov 26, 2025Updated 7 months ago
- The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcri…☆25Nov 30, 2022Updated 3 years ago
- reticulate-free single cell format conversion☆219Mar 16, 2026Updated 3 months ago
- R package for large-scale CNV analysis from RNA-seq☆20Dec 21, 2023Updated 2 years ago
- ☆98Jun 22, 2026Updated last week
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆24May 2, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Direct estimation of mean and covariance from single cell RNA seq experiments☆135May 5, 2025Updated last year
- ☆14Jun 17, 2023Updated 3 years ago
- Transcriptomics Visualization R package.☆76May 21, 2026Updated last month
- Filters for Next Generation Sequencing☆13Oct 31, 2024Updated last year
- ☆27Sep 26, 2024Updated last year
- NaturePanelForge is a code-first workflow for turning scientific figure images and open-access Nature-family papers into panel-level, exe…☆188Jun 5, 2026Updated 3 weeks ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago