shenorrLabTRDF / bseqsc
Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
☆45Updated last year
Alternatives and similar repositories for bseqsc:
Users that are interested in bseqsc are comparing it to the libraries listed below
- ConsensusTME Gene Sets and R Script☆39Updated 10 months ago
- scWGCNA☆58Updated 2 years ago
- ☆54Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- ☆40Updated 4 years ago
- ☆47Updated 3 months ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- ☆37Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆17Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆36Updated 3 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆23Updated 6 years ago
- ☆33Updated 5 years ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- An r package that works as a wrapper to homologene☆44Updated last year
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated 10 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- Epimap processing and analysis code repository☆33Updated 2 years ago
- ☆48Updated 4 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 11 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago