Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
☆47Jun 12, 2023Updated 2 years ago
Alternatives and similar repositories for bseqsc
Users that are interested in bseqsc are comparing it to the libraries listed below
Sorting:
- Multi-subject Single Cell Deconvolution☆288Mar 4, 2024Updated 2 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆81Jun 13, 2025Updated 9 months ago
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆15Oct 31, 2024Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆329Jul 28, 2020Updated 5 years ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 10 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆97Nov 24, 2020Updated 5 years ago
- ☆20Jan 16, 2026Updated 2 months ago
- Multiple trajectory alignment of time-series data☆13Oct 14, 2023Updated 2 years ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆11Mar 9, 2020Updated 6 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆22Sep 14, 2025Updated 6 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Dec 18, 2024Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Jun 9, 2022Updated 3 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆22Nov 16, 2020Updated 5 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Jan 15, 2023Updated 3 years ago
- An R package for visualising cell-cell interactions☆46Updated this week
- ☆33Jan 9, 2024Updated 2 years ago
- Cell types enrichment analysis☆208May 27, 2024Updated last year
- A toolkit for single-cell immune profiling☆365Mar 9, 2026Updated last week
- Kdrew's scripts for handling protein complex map data☆14Jun 12, 2025Updated 9 months ago
- bioinformatics R test code☆14Feb 1, 2026Updated last month
- A modular tool for proportion analysis in single-cell sequencing data☆25Feb 26, 2026Updated 3 weeks ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆109Jul 3, 2023Updated 2 years ago
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 5 years ago
- Single Cell Genomics for Enhancing Cell Composition Inference from Bulk Genomics Data☆20Jul 13, 2021Updated 4 years ago
- R package for analyzing single-cell RNA-seq data☆179Feb 29, 2024Updated 2 years ago
- ☆34Jun 7, 2019Updated 6 years ago
- ☆33Jul 11, 2018Updated 7 years ago
- A quick and flexible single-cell RNA-seq processing framework on the cloud☆39Dec 11, 2019Updated 6 years ago
- Deep Learning based cell composition analysis with Scaden.☆88Nov 5, 2024Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆221Mar 8, 2026Updated last week
- This repository is retired software☆14Oct 29, 2015Updated 10 years ago
- Small R package with some functions to visualize DGE results downstream of DESeq2☆12Jul 6, 2023Updated 2 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 5 years ago
- ☆15Feb 28, 2022Updated 4 years ago