shenorrLabTRDF / bseqscLinks
Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
☆46Updated 2 years ago
Alternatives and similar repositories for bseqsc
Users that are interested in bseqsc are comparing it to the libraries listed below
Sorting:
- ☆55Updated 5 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆46Updated 2 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 4 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- An R toolkit for estimation of cell composition from bulk expression data☆80Updated 6 months ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆47Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 3 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- scWGCNA☆61Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- ☆30Updated 7 years ago
- Clone identification from single-cell data☆61Updated 3 years ago
- scDataviz: single cell dataviz and downstream analyses☆65Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated this week
- ☆63Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- ☆43Updated 2 years ago
- ☆43Updated 4 years ago
- ☆34Updated 6 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 3 weeks ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago