shenorrLabTRDF / bseqsc

Related projects ⓘ

Alternatives and complementary repositories for bseqsc

• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 5 months ago
• jdekanter / CHETAH
  scRNA-seq cell type identification
  ☆41Updated 5 years ago
• elimereu / matchSCore2
  ☆53Updated 3 years ago
• shenorrLabTRDF / cellAlign
  ☆37Updated 3 years ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆36Updated last year
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆49Updated last year
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆42Updated 8 months ago
• nghiavtr / SCmut
  ☆31Updated 5 years ago
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆59Updated 2 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆54Updated 2 years ago
• lanagarmire / SSrGE
  ☆33Updated 5 years ago
• ggjlab / scHCL
  ☆46Updated 4 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆41Updated 9 months ago
• YosefLab / ImpulseDE2
  ☆37Updated 2 years ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆53Updated 3 years ago
• McGranahanLab / TcellExTRECT
  ☆46Updated last year
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆33Updated 2 years ago
• crazyhottommy / scATACutils
  R/Bioconductor package for working with 10x scATACseq data
  ☆38Updated 11 months ago
• ncborcherding / Trex
  Using TCR and expression for sequence embedding
  ☆48Updated last week
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆69Updated 3 years ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆42Updated 3 years ago
• qinqian / lisa
  epigenome analysis to rank transcription factors
  ☆30Updated last year
• zhengtaoxiao / Single-Cell-Metabolic-Landscape
  Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data
  ☆23Updated 3 years ago
• wzthu / esATAC
  Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
  ☆23Updated 2 years ago
• wenweixiong / MARVEL
  ☆40Updated 3 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆36Updated 4 months ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆43Updated 4 years ago
• adoostparast / CellR
  CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
  ☆15Updated 3 years ago
• GIS-SP-Group / RCA
  R package for robust clustering of single cell RNA sequencing data
  ☆38Updated last year
• neurorestore / DE-analysis
  ☆35Updated 3 years ago