loosolab / cardiac-progenitorsLinks
Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement
☆9Updated 4 years ago
Alternatives and similar repositories for cardiac-progenitors
Users that are interested in cardiac-progenitors are comparing it to the libraries listed below
Sorting:
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Single Cell Epigenome-based Inference of Activity☆19Updated last year
- ☆28Updated 6 years ago
- post-clustering differential expression test☆35Updated 6 years ago
- ☆41Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 11 months ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 6 months ago
- An analytics package for single cell data☆22Updated 3 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 4 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 2 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆15Updated 3 years ago
- Analysis of single cell RNA-seq data from innate lympoid cells☆15Updated 7 years ago
- ☆29Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆34Updated 5 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 5 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago