loosolab / cardiac-progenitorsLinks
Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement
☆9Updated 4 years ago
Alternatives and similar repositories for cardiac-progenitors
Users that are interested in cardiac-progenitors are comparing it to the libraries listed below
Sorting:
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Single Cell Epigenome-based Inference of Activity☆19Updated last year
- ☆28Updated 6 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated last year
- ☆41Updated 4 years ago
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆15Updated 4 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Algorithms for single-cell analysis☆29Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated last month
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- ☆22Updated last year
- post-clustering differential expression test☆35Updated 6 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- RNA velocity validation☆22Updated 3 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 9 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 10 months ago
- ☆35Updated 4 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 2 weeks ago
- ☆29Updated 2 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆52Updated 4 years ago
- Single-cell Case Control Analysis☆50Updated 8 months ago
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- R package for gene selection using k-NN graphs.☆13Updated 2 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 5 years ago