☆28May 22, 2025Updated last year
Alternatives and similar repositories for multiDGD
Users that are interested in multiDGD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆14Aug 8, 2024Updated 2 years ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Aug 5, 2026Updated last month
- ☆101Updated this week
- Python implementation of Milo for differential abundance testing on KNN graph☆86Feb 17, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16Sep 1, 2023Updated 3 years ago
- Functional and Learnable Cell dynamicS☆21May 13, 2025Updated last year
- ☆12Updated this week
- Supervised cell type identification for scATAC-seq data☆15Aug 23, 2023Updated 3 years ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆19Jun 9, 2025Updated last year
- ☆19Mar 31, 2026Updated 5 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆32Aug 11, 2022Updated 4 years ago
- Code, documentation, and tutorials for the DGD model trained on bulk RNA-Seq data.☆13Sep 4, 2026Updated 2 weeks ago
- ☆69Apr 22, 2026Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Mosaic single cell data integration using non-overlapping features☆39Sep 20, 2022Updated 3 years ago
- Detect doublets in single-cell RNA-seq data☆40Jul 3, 2019Updated 7 years ago
- Annotatability, a method to identify meaningful patterns in single-cell genomics data through annotation-trainability analysis, which est…☆19Jun 23, 2025Updated last year
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Jun 10, 2022Updated 4 years ago
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆16Nov 5, 2024Updated last year
- mosaicMPI: mosaic multi-resolution program integration☆12Jul 9, 2026Updated 2 months ago
- Invariant Representation learning☆20Jun 26, 2024Updated 2 years ago
- Reference mapping for single-cell genomics☆410Jun 26, 2026Updated 2 months ago
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆13May 30, 2024Updated 2 years ago
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 11 months ago
- Inferring multi-modality dynamics for single cell genomics data☆15Dec 18, 2025Updated 9 months ago
- Single-Cell Inference of Class Switch Recombination☆25Jun 19, 2026Updated 3 months ago
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆105Apr 11, 2025Updated last year
- SNV calling from single cell sequencing☆119Nov 11, 2024Updated last year
- ☆16Mar 8, 2024Updated 2 years ago
- Universal Single-Cell Genomics Preprocessing package☆53Updated this week
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆62May 19, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆49Jan 28, 2026Updated 7 months ago
- TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data☆16Jul 12, 2019Updated 7 years ago
- ☆27Dec 3, 2025Updated 9 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆35Apr 4, 2025Updated last year
- ☆12Jun 7, 2024Updated 2 years ago
- Stitch multiple Visium slides together☆17Oct 16, 2025Updated 11 months ago
- Code for the spatial transcriptomic paper on IPF lungs☆24Jul 18, 2024Updated 2 years ago