☆27May 22, 2025Updated 9 months ago
Alternatives and similar repositories for multiDGD
Users that are interested in multiDGD are comparing it to the libraries listed below
Sorting:
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆15Aug 8, 2024Updated last year
- scVI extension for unspliced RNA☆16May 18, 2025Updated 9 months ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Jun 7, 2025Updated 8 months ago
- ☆24Dec 3, 2025Updated 2 months ago
- Annotatability, a method to identify meaningful patterns in single-cell genomics data through annotation-trainability analysis, which est…☆19Jun 23, 2025Updated 8 months ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Jun 10, 2022Updated 3 years ago
- ☆14Mar 8, 2024Updated last year
- ☆16Oct 3, 2025Updated 4 months ago
- ☆11Oct 19, 2024Updated last year
- Inferring multi-modality dynamics for single cell genomics data☆13Dec 18, 2025Updated 2 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆81Feb 17, 2025Updated last year
- Code, documentation, and tutorials for the DGD model trained on bulk RNA-Seq data.☆13Aug 27, 2024Updated last year
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆13May 30, 2024Updated last year
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆12Nov 5, 2024Updated last year
- Supervised cell type identification for scATAC-seq data☆14Aug 23, 2023Updated 2 years ago
- mosaicMPI: mosaic multi-resolution program integration☆12Dec 9, 2025Updated 2 months ago
- ☆12Jun 7, 2024Updated last year
- SNV calling from single cell sequencing☆119Nov 11, 2024Updated last year
- ☆90Updated this week
- Collection of scripts for analysis of pan fetal immune atlas☆29Aug 11, 2022Updated 3 years ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆58May 19, 2025Updated 9 months ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆35Feb 10, 2025Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Apr 4, 2025Updated 10 months ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆18Jun 9, 2025Updated 8 months ago
- Higher-order genetic interaction discovery with network-based biological priors.☆13Feb 8, 2024Updated 2 years ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 2 months ago
- ☆16Sep 1, 2023Updated 2 years ago
- ☆62Dec 8, 2025Updated 2 months ago
- R package for semi-supervised single-cell data integration☆96Jan 27, 2026Updated last month
- Mosaic single cell data integration using non-overlapping features☆37Sep 20, 2022Updated 3 years ago
- ☆17Jul 7, 2025Updated 7 months ago
- A repository for reproducing experiments from the TxPert paper☆25Jan 9, 2026Updated last month
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆17Sep 4, 2024Updated last year
- Detect doublets in single-cell RNA-seq data☆39Jul 3, 2019Updated 6 years ago
- ☆46Jan 28, 2026Updated last month
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated 2 weeks ago
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆16Aug 9, 2025Updated 6 months ago
- ☆23Sep 29, 2025Updated 5 months ago