Alternatives and similar repositories for multiDGD

Users that are interested in multiDGD are comparing it to the libraries listed below

• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆30Updated 3 weeks ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆34Updated 10 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆31Updated 11 months ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆43Updated 2 years ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆28Updated 3 months ago
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆44Updated last year
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆41Updated 2 years ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆33Updated 2 years ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated last year
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆67Updated 7 months ago
• theislab / scTab
  ☆62Updated last year
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆25Updated last month
• zhouzilu / cTPnet
  cTPnet Package
  ☆27Updated 3 years ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆34Updated last month
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆45Updated 5 months ago
• shmohammadi86 / SCINET
  ☆19Updated 4 years ago
• yal054 / epiformer
  ☆27Updated 9 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated last year
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆31Updated last week
• kaizhang / single-cell-benchmark
  ☆11Updated 2 years ago
• theislab / scPoli_reproduce
  Reproducibility notebooks for scPoli
  ☆22Updated 2 years ago
• datapplab / AutoClass
  ☆43Updated 3 years ago
• secrierlab / SpottedPy
  Hotspot cluster distance analysis in spatial transcriptomic data
  ☆35Updated 11 months ago
• hemberg-lab / sc3s
  Single Cell Consensus Clustering with Speed
  ☆20Updated 3 years ago
• cellatlas / human
  ☆44Updated last year
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated last year
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆30Updated 2 months ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆24Updated 4 months ago
• ajaynadig / TRADEtools
  ☆36Updated 11 months ago
• karbalayghareh / GraphReg
  Chromatin interaction aware gene regulatory modeling with graph attention networks
  ☆28Updated 2 years ago