stefanpeidli / mousipyLinks
Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.
☆28Updated 5 months ago
Alternatives and similar repositories for mousipy
Users that are interested in mousipy are comparing it to the libraries listed below
Sorting:
- One-liner for mapping orthologous genes in both R and python using ENSEMBL BioMART☆24Updated 4 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last week
- Metacells - Single-cell RNA Sequencing Analysis☆115Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 8 months ago
- Gene group activity utility functions for Scanpy☆95Updated 10 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆77Updated 2 months ago
- Single cell omics biology annotations☆50Updated 6 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 4 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated last month
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Updated 10 months ago
- Non-parametric density inference for single-cell analysis.☆72Updated 5 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- Geometry-preserving random sampling☆93Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆79Updated 9 months ago
- Multi-resolution Variational Inference☆22Updated this week
- ☆45Updated last week
- Python implementation of the Slingshot pseudotime algorithm☆66Updated 2 weeks ago
- ☆32Updated 8 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆63Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- ☆83Updated this week
- Using TCR and expression for sequence embedding☆60Updated 2 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆81Updated 7 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆29Updated 2 weeks ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆80Updated this week
- Single-Cell Clustering Assessment Framework☆106Updated 2 years ago