jinworks / CellChatLinks
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
☆429Updated last week
Alternatives and similar repositories for CellChat
Users that are interested in CellChat are comparing it to the libraries listed below
Sorting:
- A package to help convert different single-cell data formats to each other☆433Updated last year
- R package for detecting doublets in single-cell RNA sequencing data☆480Updated 3 months ago
- ☆356Updated 3 years ago
- NicheNet: predict active ligand-target links between interacting cells☆550Updated last week
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆522Updated last year
- ☆391Updated last week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆409Updated last month
- ☆269Updated 8 months ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆497Updated last week
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆460Updated last year
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆423Updated 4 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆379Updated 2 months ago
- High dimensional weighted gene co-expression network analysis☆420Updated this week
- Community-provided extensions to Seurat☆340Updated 7 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆299Updated 4 years ago
- Inferring CNV from Single-Cell RNA-Seq☆625Updated 5 months ago
- R package for integrating and analyzing multiple single-cell datasets☆417Updated 2 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆347Updated 4 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆338Updated 11 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆520Updated 2 weeks ago
- A toolkit for single-cell immune profiling☆341Updated this week
- Useful functions to make your scRNA-seq plot more cool!☆344Updated last month
- A tool for semi-automatic cell type classification☆385Updated 2 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆284Updated 2 years ago
- ☆242Updated last year
- scripts and notebooks from sanbomics☆426Updated 7 months ago
- Papers with code for single cell related papers☆288Updated 2 years ago
- R toolkit for the analysis of single-cell chromatin data☆377Updated 5 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆580Updated 8 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆264Updated this week