SpatialCorr: Identify gene sets with spatially varying correlation
☆18Jan 2, 2024Updated 2 years ago
Alternatives and similar repositories for SpatialCorr
Users that are interested in SpatialCorr are comparing it to the libraries listed below
Sorting:
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Feb 2, 2026Updated 3 weeks ago
- FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.☆13Dec 6, 2025Updated 2 months ago
- developmental cortical propagation detection + analyses☆10Jan 16, 2023Updated 3 years ago
- ☆16Nov 24, 2023Updated 2 years ago
- https://doi.org/10.1101/2021.02.22.432228☆10Nov 24, 2021Updated 4 years ago
- Python codes and sample scripts for connectome-spatial smoothing (CSS)☆11Sep 21, 2023Updated 2 years ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆27Jul 26, 2023Updated 2 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆36Sep 20, 2024Updated last year
- A nonlinear time series analysis toolbox☆12Nov 12, 2022Updated 3 years ago
- ☆14Updated this week
- Interactive and static 3D visualisation for functional brain mapping☆16Sep 25, 2024Updated last year
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆13Jan 28, 2025Updated last year
- A toolbox for brain network modeling on GPUs☆19Jan 9, 2026Updated last month
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Sep 21, 2021Updated 4 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆62Feb 1, 2021Updated 5 years ago
- ☆17Feb 15, 2026Updated 2 weeks ago
- Single Cell Analysis Operations☆13Nov 25, 2025Updated 3 months ago
- Hopefully, a compact and general-purpose Python package for Multiperturbation Shapley value Analysis (MSA).☆20Jul 14, 2025Updated 7 months ago
- THOI: An efficient library for higher order interactions analysis based on Gaussian copulas enhanced by batch-processing☆22Aug 19, 2025Updated 6 months ago
- CellCoal: coalescent simulation of single-cell NGS genotypes☆15Feb 10, 2025Updated last year
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- QuPath extension to run StarDist nucleus detection☆48Jul 2, 2025Updated 7 months ago
- Scripts from the GBM cellular states paper☆20Feb 24, 2021Updated 5 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- Surface to Tractography Real-time EEG Activation Mapping in 4 Dimensions☆27Jul 9, 2025Updated 7 months ago
- Canonical Correlation Analysis and Partial Least Squares Toolkit for neuroscientists☆20Dec 22, 2023Updated 2 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Feb 14, 2021Updated 5 years ago
- Quantifying and describing blood-oxygen-level dependent (BOLD) spatial propagation activity☆28Sep 6, 2023Updated 2 years ago
- ☆33Jan 9, 2024Updated 2 years ago
- Interoperability between SpatialData and the Xenium Explorer☆25Jul 31, 2024Updated last year
- QuPath extension to interactively align images☆26Aug 7, 2025Updated 6 months ago
- matplotlib mesh surface plotter☆30Jul 25, 2025Updated 7 months ago
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆25Dec 11, 2023Updated 2 years ago
- Null models in network neuroscience☆27May 31, 2022Updated 3 years ago
- Code for the paper on t-SNE with variable degree of freedom☆25Aug 5, 2020Updated 5 years ago
- pyebm - A toolbox for Event Based Models☆29Jan 20, 2022Updated 4 years ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆67Dec 3, 2025Updated 2 months ago
- Estimation, analysis and decomposition of brainwave spatiotemporal dynamics☆30Jul 6, 2021Updated 4 years ago
- Inferring gene co-expression networks from single cell gene expression data☆28Aug 5, 2022Updated 3 years ago