Alternatives and similar repositories for SpatialCorr:

Users that are interested in SpatialCorr are comparing it to the libraries listed below

• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆27Updated 7 months ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆58Updated last year
• wanglab-broad / CAST
  CAST package
  ☆34Updated 6 months ago
• willtownes / spatial-factorization-py
  Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
  ☆16Updated 5 months ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 4 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆54Updated last month
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆17Updated this week
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆26Updated 7 months ago
• LieberInstitute / VistoSeg
  Image processing pipeline for spatial projects
  ☆15Updated last year
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆34Updated 2 months ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆29Updated 5 months ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆49Updated last week
• ati-lz / ISCHIA
  Framework for analysis of cell-types and Ligand-Receptor cooccurrences
  ☆15Updated 2 years ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆26Updated this week
• iancovert / persist
  ☆16Updated 9 months ago
• almaan / eggplant
  ☆21Updated 2 years ago
• quadbio / VoxHunt
  VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
  ☆46Updated last year
• msraredon / Connectome
  ☆28Updated 3 years ago
• prabhakarlab / Banksy_py
  ☆47Updated 4 months ago
• KChen-lab / bindSC
  Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…
  ☆35Updated last year
• jfnavarro / st_analysis
  A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
  ☆18Updated 3 years ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆30Updated this week
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆25Updated 4 months ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• GuignardLab / sc3D
  Spatial Single Cell transcriptomic library
  ☆17Updated 3 months ago
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 3 years ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆36Updated 5 months ago
• aristoteleo / spateo-viewer
  Web application demonstrating 3D modeling of spatial transcriptomics
  ☆18Updated 4 months ago
• xleizi / easySCF
  ☆40Updated 5 months ago
• AllenInstitute / cell_type_mapper
  Repository for storing prototype functionality implementations for the BKP
  ☆26Updated 2 weeks ago