tsailabSJ / circleseq
☆22Updated 6 years ago
Alternatives and similar repositories for circleseq:
Users that are interested in circleseq are comparing it to the libraries listed below
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆43Updated 7 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 10 months ago
- Analysis pipeline for the GUIDE-seq assay.☆77Updated last year
- Fork of the Polysolver project☆31Updated 5 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- ☆41Updated last year
- ☆41Updated 2 years ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆21Updated 3 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Tools for analyzing DNA methylation data☆39Updated last month
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated this week
- ☆38Updated 5 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Analysis pipeline for the GUIDE-seq assay.☆24Updated last month
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆47Updated 2 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆36Updated 2 months ago
- ☆67Updated last year
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- IDR☆31Updated 2 years ago
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆42Updated this week
- bioinformatic pipeline for GLORI☆20Updated 10 months ago
- Software for performing UDiTaS sequencing analysis.☆13Updated 2 years ago