tsailabSJ / circleseqLinks
☆23Updated 7 years ago
Alternatives and similar repositories for circleseq
Users that are interested in circleseq are comparing it to the libraries listed below
Sorting:
- Fork of the Polysolver project☆33Updated 6 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Updated 8 years ago
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆62Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 4 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated last month
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- ☆60Updated 5 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- A comprehensive, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data☆17Updated 4 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 2 months ago
- FlashFry: The rapid CRISPR target site characterization tool☆77Updated last year
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆107Updated last month
- IDR☆31Updated 2 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆75Updated 3 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆30Updated 7 years ago
- A list of alternative splicing analysis resources☆46Updated 9 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 11 months ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆48Updated last year
- Notes on ChIP-seq and other-seq-related tools☆26Updated 5 months ago
- New version of JACUSA -> 2.0☆30Updated last month
- Extract 3D contacts (.pairs) from sequencing alignments☆123Updated 2 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆73Updated 2 years ago