markrobinsonuzh / CrispRVariantsLinks
☆25Updated 4 years ago
Alternatives and similar repositories for CrispRVariants
Users that are interested in CrispRVariants are comparing it to the libraries listed below
Sorting:
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 4 months ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 9 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 11 months ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆22Updated 4 years ago
- ☆13Updated 2 weeks ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 5 months ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago