markrobinsonuzh / CrispRVariants
☆25Updated 4 years ago
Alternatives and similar repositories for CrispRVariants:
Users that are interested in CrispRVariants are comparing it to the libraries listed below
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 10 months ago
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 4 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 weeks ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆9Updated 8 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 6 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Simplifies parallel processing of DNA sequencing reads☆9Updated 6 months ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Comprehensive Human Expressed SequenceS☆16Updated 8 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- Personal diploid genome creation and coordinate conversion☆24Updated last week
- Tools for generating and decoding error-correcting DNA barcodes☆16Updated 3 years ago
- k-mer probability logo☆11Updated 2 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Toolkit for benchmarking fusion transcript predictions☆19Updated 7 months ago