ay-lab / FitHiChIPLinks
Statistically Significant loops from HiChIP data
☆46Updated last year
Alternatives and similar repositories for FitHiChIP
Users that are interested in FitHiChIP are comparing it to the libraries listed below
Sorting:
- Tutorial Website☆62Updated 4 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 6 months ago
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Updated 2 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- An Optimized Nested TAD caller for Hi-C data☆25Updated 4 years ago
- RNA editing tests☆17Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated last month
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- ☆22Updated 5 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- 4C-seq processing pipeline☆26Updated 9 months ago
- ☆22Updated 2 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆62Updated 2 months ago
- R package to evaluate the reproducibility of Hi-C data☆27Updated 2 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆35Updated last year
- Chromatin States Map in mouse embryonic stem cell☆18Updated 7 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- ☆15Updated 2 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- ☆53Updated last year
- ☆17Updated 7 years ago