ay-lab / FitHiChIPLinks
Statistically Significant loops from HiChIP data
☆44Updated last year
Alternatives and similar repositories for FitHiChIP
Users that are interested in FitHiChIP are comparing it to the libraries listed below
Sorting:
- ATAC-seq processing pipeline☆34Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated last year
- RNA editing tests☆17Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- Tutorial Website☆59Updated 4 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆48Updated 2 months ago
- ☆17Updated 6 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆30Updated 5 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- Chromatin States Map in mouse embryonic stem cell☆15Updated 7 years ago
- scripts for analyzing the CVDC data.☆19Updated 5 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆19Updated this week
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆23Updated 3 years ago
- ☆51Updated last year
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Updated 2 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated 3 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated 2 years ago
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆20Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago