XueyiDong / LongReadBenchmarkLinks
Benchmarking long-read RNA-seq analysis tools
☆27Updated 9 months ago
Alternatives and similar repositories for LongReadBenchmark
Users that are interested in LongReadBenchmark are comparing it to the libraries listed below
Sorting:
- ☆23Updated 4 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated 2 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆17Updated last year
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆42Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- Micro DNA identification☆24Updated 4 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆16Updated 4 months ago
- Long read to rMATS☆32Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆40Updated 3 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- General Use Scripts and Helper functions☆16Updated 7 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 8 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated last month
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- ☆13Updated 3 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 8 months ago
- ☆34Updated 3 weeks ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Updated 2 years ago
- simplified cellranger for long-read data☆19Updated 3 months ago
- ☆18Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 2 months ago
- ☆38Updated 2 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- ☆20Updated 6 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- ☆20Updated 2 years ago