Benchmarking long-read RNA-seq analysis tools
☆27Feb 17, 2025Updated last year
Alternatives and similar repositories for LongReadBenchmark
Users that are interested in LongReadBenchmark are comparing it to the libraries listed below
Sorting:
- ☆10May 31, 2022Updated 3 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- 10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/☆13Jul 27, 2025Updated 7 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Feb 28, 2023Updated 3 years ago
- LongSom tool for long-reads☆11May 20, 2025Updated 10 months ago
- Isoform-level functional RNA-Seq analysis 🧬☆36Nov 12, 2025Updated 4 months ago
- Modify existing reference fasta and gff3/gtf files to include a new sequence☆33Feb 27, 2026Updated 3 weeks ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago
- Long read to rMATS☆32May 5, 2023Updated 2 years ago
- single-nucleus nanopore reads processing pipeline☆16Aug 16, 2023Updated 2 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 5 months ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 4 years ago
- ☆22Jul 30, 2025Updated 7 months ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 10 months ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Jul 3, 2022Updated 3 years ago
- ☆39Apr 25, 2023Updated 2 years ago
- ☆18Jan 13, 2025Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆67Jan 19, 2026Updated 2 months ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- ☆27May 8, 2022Updated 3 years ago
- long read RNA-seq quantification☆106Updated this week
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Mar 21, 2023Updated 3 years ago
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆18Jan 19, 2026Updated 2 months ago
- SingleCell Nanopore sequencing data analysis☆64May 30, 2025Updated 9 months ago
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆14Jul 16, 2025Updated 8 months ago
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 3 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Oct 29, 2019Updated 6 years ago
- ☆13Feb 17, 2022Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆38Mar 25, 2025Updated 11 months ago
- ☆20Oct 5, 2022Updated 3 years ago
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated last year
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆16Mar 9, 2026Updated last week
- A pipeline to process m6A-seq data and down stream analysis.☆45Aug 5, 2020Updated 5 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- This is the code used for the paper "PMGT-VR: A decentralized proximal-gradient algorithmic framework with variance reduction", prepint.☆16Jul 2, 2022Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Mar 3, 2026Updated 2 weeks ago