ren-lab / hic-pipeline
☆24Updated 3 years ago
Alternatives and similar repositories for hic-pipeline:
Users that are interested in hic-pipeline are comparing it to the libraries listed below
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆16Updated 3 months ago
- scripts for analyzing the CVDC data.☆17Updated 5 years ago
- ☆10Updated 5 years ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆21Updated 3 weeks ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆43Updated 5 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆63Updated 2 months ago
- A Perl/R pipeline for plotting metagenes☆36Updated 3 years ago
- Tutorial Website☆55Updated 3 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆54Updated last year
- Package for analysis and characterization of differential TADs☆23Updated 2 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆69Updated last year
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆60Updated last year
- Analysis of Paired-Tag datasets☆39Updated last year
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated last year
- ☆31Updated 7 months ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆30Updated 6 months ago
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆18Updated 6 months ago
- Micro-C QC and data analysis☆15Updated last year
- Links to ATAC-seq analysis tools☆58Updated 3 years ago
- single-cell clustering based on alternative splicing landscapes☆16Updated 10 months ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆45Updated last month
- bioinformatic pipeline for GLORI☆18Updated 8 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 6 months ago
- Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis☆7Updated 5 years ago
- Genome-wide contact analysis using sklearn☆60Updated 10 months ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆19Updated 3 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago