ren-lab / hic-pipelineLinks
☆24Updated 4 years ago
Alternatives and similar repositories for hic-pipeline
Users that are interested in hic-pipeline are comparing it to the libraries listed below
Sorting:
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Updated 2 weeks ago
- scripts for analyzing the CVDC data.☆19Updated 5 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆69Updated 8 months ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 6 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated 11 months ago
- Genome-wide contact analysis using sklearn☆68Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 9 years ago
- Tutorial Website☆59Updated 4 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆59Updated last year
- Analysis of Paired-Tag datasets☆42Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆13Updated 3 months ago
- Docker for 4DN Hi-C processing pipeline☆61Updated 7 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆50Updated 11 months ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 3 years ago
- ☆12Updated 5 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆28Updated 3 months ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 3 months ago
- ☆32Updated last year
- An easy-to-use Hi-C data processing software supporting distributed computation.☆61Updated 11 months ago
- Links to ATAC-seq analysis tools☆68Updated 3 years ago
- Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs☆50Updated 6 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- ☆17Updated 6 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆67Updated last week
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 4 years ago