jpiper / pyDNaseLinks
Python module for the easy handling and analysis of DNase-seq data
☆37Updated 5 years ago
Alternatives and similar repositories for pyDNase
Users that are interested in pyDNase are comparing it to the libraries listed below
Sorting:
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- ☆16Updated 8 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆35Updated 2 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 5 months ago
- ☆19Updated 7 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆27Updated 7 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 5 years ago
- ☆31Updated 5 years ago
- Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)☆9Updated 7 years ago
- Exon-exon splice junctions across SRA☆41Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript☆17Updated 7 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- chia pet analysis software☆25Updated 6 years ago
- RAGE-seq scripts☆18Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 9 months ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year