lh3 / hapdip
The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data
☆30Updated 7 years ago
Alternatives and similar repositories for hapdip:
Users that are interested in hapdip are comparing it to the libraries listed below
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- Linked-Read Alignment Tool☆27Updated 5 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- ☆35Updated 5 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 8 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- UCSC Nanopore☆43Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- for detecting internal tandem duplication from genome sequence data.☆11Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago