The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data
☆32Feb 20, 2018Updated 8 years ago
Alternatives and similar repositories for hapdip
Users that are interested in hapdip are comparing it to the libraries listed below
Sorting:
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Nov 30, 2020Updated 5 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Feb 26, 2019Updated 7 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Sep 4, 2019Updated 6 years ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 4 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Jun 10, 2021Updated 4 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Apr 23, 2016Updated 9 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- Simplify snpEff annotations for interesting cases