lh3 / hapdipLinks
The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data
☆30Updated 7 years ago
Alternatives and similar repositories for hapdip
Users that are interested in hapdip are comparing it to the libraries listed below
Sorting:
- 10x Genomics Reads Simulator☆45Updated last year
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Linked-Read Alignment Tool☆27Updated 6 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- A comprehensive pipeline to analyze and visualize structural variants☆20Updated 5 years ago
- ☆35Updated 4 years ago
- Structural Variant Index☆75Updated 7 months ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- ☆30Updated 2 years ago
- ☆26Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆17Updated 7 years ago