WeiqiangZhou / BIRDView external linksLinks
Big data Regression for predicting DNase I hypersensitivity
☆31Aug 27, 2024Updated last year
Alternatives and similar repositories for BIRD
Users that are interested in BIRD are comparing it to the libraries listed below
Sorting:
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- SCRAT: Single-Cell Regulome Analysis Tool☆15Apr 4, 2020Updated 5 years ago
- A deep learning package for predicting TF binding☆42Jan 23, 2020Updated 6 years ago
- ☆12Nov 9, 2020Updated 5 years ago
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 4 years ago
- nucleosome calling using ATAC-seq☆110Dec 20, 2020Updated 5 years ago
- ☆10Oct 12, 2023Updated 2 years ago
- Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".☆11Jul 5, 2018Updated 7 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆25Apr 10, 2019Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Aug 17, 2016Updated 9 years ago
- Quasilinear data representations for single-cell omics data analysis☆43May 4, 2023Updated 2 years ago
- bradner lab computation pipeline scripts☆54Aug 22, 2025Updated 5 months ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 7 years ago
- ☆13Jun 2, 2020Updated 5 years ago
- ☆14May 26, 2020Updated 5 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Nov 20, 2018Updated 7 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Apr 13, 2021Updated 4 years ago
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆20Jan 3, 2026Updated last month
- GWAS gold standards repository☆40Nov 23, 2023Updated 2 years ago
- R package of CSOmap(developing☆13Mar 22, 2022Updated 3 years ago
- Independent Hypothesis Weighting☆16Sep 25, 2023Updated 2 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆19Jul 7, 2022Updated 3 years ago
- ☆21Mar 20, 2017Updated 8 years ago
- Single cell analysis in Javascript☆22Nov 28, 2025Updated 2 months ago
- SHARP: Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection☆17Apr 26, 2021Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Feb 9, 2021Updated 5 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆41Apr 26, 2024Updated last year
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Oct 15, 2025Updated 4 months ago
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆20Jan 22, 2026Updated 3 weeks ago
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆23Dec 19, 2024Updated last year
- ☆16Jan 2, 2024Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Jun 23, 2023Updated 2 years ago
- Toolkit for QTL mapping and meta-analysis.☆17May 24, 2022Updated 3 years ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆20Nov 19, 2020Updated 5 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Sep 17, 2021Updated 4 years ago
- A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences☆158Jan 14, 2017Updated 9 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Jun 9, 2022Updated 3 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Jul 15, 2015Updated 10 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago