Henikoff / scCUT-TagLinks
☆17Updated 2 years ago
Alternatives and similar repositories for scCUT-Tag
Users that are interested in scCUT-Tag are comparing it to the libraries listed below
Sorting:
- Analysis pipeline for CUT&TAG data☆18Updated 4 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- ☆49Updated 11 months ago
- Toolkit for single-cell copy number analysis☆23Updated this week
- ☆19Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆18Updated 4 years ago
- ☆20Updated last year
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- ☆34Updated last year
- ☆17Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- ☆12Updated 5 years ago
- Scripts used to analyse EPICC ATAC-Seq data☆9Updated 2 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆25Updated 2 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 3 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆20Updated last year
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 4 years ago
- ☆23Updated 2 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆20Updated 4 months ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆12Updated 4 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆17Updated 4 years ago