*UNOFFICIAL, UNMAINTAINED and OUTDATED*: This was an unofficial archive of GMAP-GSNAP releases. Please use the original website for current versions of the source code.
☆34Nov 1, 2015Updated 10 years ago
Alternatives and similar repositories for GMAP-GSNAP
Users that are interested in GMAP-GSNAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Romulus: Robust multi-state identification of transcription factor binding sites from DNase-seq data☆10Mar 6, 2019Updated 7 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 4 years ago
- An alignment tool for optical mapping data☆10May 29, 2020Updated 6 years ago
- Wrappers around NGS peak callers to both call peaks and run IDR☆11Aug 2, 2013Updated 13 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆11Oct 13, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 10 years ago
- a pipeline for quantification of circular RNA.☆14May 7, 2017Updated 9 years ago
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆19Oct 30, 2020Updated 6 years ago
- ☆11Dec 3, 2013Updated 12 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 12 years ago
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.☆18Aug 23, 2022Updated 4 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 11 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Applying IDR analysis to Homer peaks.☆20May 8, 2020Updated 6 years ago
- GEMTools main repository☆17Jun 21, 2022Updated 4 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 5 months ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 8 years ago
- scripts to parse IrysView output☆39Sep 3, 2015Updated 11 years ago
- A collection of scripts developed to interact with fasta, fastq and sam/bam files.☆52Jul 11, 2016Updated 10 years ago
- Q ChIP-seq peak caller☆18Jul 17, 2024Updated 2 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 10 years ago
- DART – a fast and accurate RNA-seq mapper with a divide-and-conquer strategy☆12Jun 4, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A new REDItools implementation to speed-up the RNA editing profiling in massive RNAseq data☆15Sep 28, 2026Updated last month
- NGS perl modules☆10Updated this week
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Sep 24, 2015Updated 11 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆146Oct 4, 2016Updated 10 years ago
- ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps☆23Oct 12, 2017Updated 9 years ago
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆20Dec 6, 2017Updated 8 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 4 years ago
- ☆16Mar 6, 2018Updated 8 years ago
- RNA-Seq Unified Mapper☆27Sep 9, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Analysis tool for Nanopore sequencing data☆34Apr 15, 2019Updated 7 years ago
- ☆12Jan 21, 2016Updated 10 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 7 years ago
- Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis☆18Nov 2, 2022Updated 3 years ago
- seqpac - A Framework for small RNA analysis in R using Sequence-Based Counts☆10Oct 12, 2026Updated 2 weeks ago
- ☆16Sep 20, 2022Updated 4 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago