*UNOFFICIAL, UNMAINTAINED and OUTDATED*: This was an unofficial archive of GMAP-GSNAP releases. Please use the original website for current versions of the source code.
☆34Nov 1, 2015Updated 10 years ago
Alternatives and similar repositories for GMAP-GSNAP
Users that are interested in GMAP-GSNAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GEMTools main repository☆17Jun 21, 2022Updated 4 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆11Jul 22, 2026Updated 2 weeks ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 10 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆44Jul 6, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 9 months ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 4 years ago
- Applying IDR analysis to Homer peaks.☆18May 8, 2020Updated 6 years ago
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.☆17Aug 23, 2022Updated 3 years ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 2 months ago
- Q ChIP-seq peak caller☆18Jul 17, 2024Updated 2 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Sep 24, 2015Updated 10 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆20Dec 6, 2017Updated 8 years ago
- A collection of scripts developed to interact with fasta, fastq and sam/bam files.☆52Jul 11, 2016Updated 10 years ago
- ☆15Mar 6, 2018Updated 8 years ago
- Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis☆18Nov 2, 2022Updated 3 years ago
- a pipeline for quantification of circular RNA.☆14May 7, 2017Updated 9 years ago
- This is code for running Orthofinder -> PAML☆13Jul 27, 2016Updated 10 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- NGS perl modules☆10Jul 31, 2026Updated last week
- ☆12Jan 21, 2016Updated 10 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 7 years ago
- example applications built using bíogo☆18Apr 19, 2021Updated 5 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 4 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Jun 23, 2016Updated 10 years ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 9 years ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 7 years ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆13Apr 14, 2026Updated 3 months ago
- R package to quickly obtain count vectors from indexed bam files☆15May 21, 2026Updated 2 months ago
- Peak calling for 4C data☆13May 4, 2018Updated 8 years ago
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆71Mar 1, 2023Updated 3 years ago
- Estimation of pairwise distances under a probabilistic framework☆11Aug 11, 2023Updated 3 years ago
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- C++ API & command-line toolkit for working with BAM data☆431May 18, 2025Updated last year