juliangehring / GMAP-GSNAPLinks
*UNOFFICIAL, UNMAINTAINED and OUTDATED*: This was an unofficial archive of GMAP-GSNAP releases. Please use the original website for current versions of the source code.
☆33Updated 9 years ago
Alternatives and similar repositories for GMAP-GSNAP
Users that are interested in GMAP-GSNAP are comparing it to the libraries listed below
Sorting:
- A software for calculating telomere length☆72Updated 6 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- ☆78Updated 11 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 6 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated last year
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- ☆51Updated 6 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- QDNAseq package for Bioconductor☆52Updated last year
- CN-Learn☆30Updated 5 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Powerful statistics for VCF files☆72Updated 3 months ago
- Precision HLA typing from next-generation sequencing data☆73Updated 2 months ago
- An awk-like VCF parser☆56Updated last year
- Comprehensive benchmark of structural variant callers☆47Updated 4 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 5 months ago
- for visual evaluation of read support for structural variation☆55Updated last year
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- ☆45Updated 8 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago