cnobles / iGUIDELinks
Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9.
☆22Updated 2 weeks ago
Alternatives and similar repositories for iGUIDE
Users that are interested in iGUIDE are comparing it to the libraries listed below
Sorting:
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Ultra-fast 5' and 3' demultiplexer☆27Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 5 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated 2 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago
- Analysis pipeline for the GUIDE-seq assay.☆27Updated last week
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated this week
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 6 months ago
- Python package to annotate and visualize gene fusions.☆64Updated 10 months ago
- HLA typing for Sanger Based Test☆17Updated 2 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆60Updated 7 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆29Updated last year
- Gene Fusion Visualiser☆51Updated 2 years ago
- ☆50Updated 4 years ago
- Long read to rMATS☆32Updated 2 years ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- Merging paired-end reads and removing adapters☆45Updated 4 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- ☆23Updated 6 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 4 months ago
- Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.☆30Updated 10 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 3 months ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated 2 years ago
- Demultiplexes a fastq.☆45Updated 4 years ago
- simplified cellranger for long-read data☆19Updated 3 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year