cnobles / iGUIDE
Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9.
☆21Updated this week
Alternatives and similar repositories for iGUIDE:
Users that are interested in iGUIDE are comparing it to the libraries listed below
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆22Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆25Updated 11 months ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆25Updated 3 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆37Updated 2 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆50Updated last month
- Digenome-toolkit ver2.☆16Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Analysis pipeline for the GUIDE-seq assay.☆24Updated last month
- ☆26Updated last month
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated 6 months ago
- ☆15Updated 2 years ago
- HLA typing for Sanger Based Test☆17Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Long read to rMATS☆31Updated last year
- ☆47Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated 10 months ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆31Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆46Updated this week
- Fork of the Polysolver project☆31Updated 5 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- Interactive multiscale visualization for structural variation in human genomes☆68Updated this week
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 7 years ago
- off-targeting assessment of Cas9 gRNAs☆13Updated 3 years ago
- ☆15Updated last year