tsailabSJ / changeseq

Related projects ⓘ

Alternatives and complementary repositories for changeseq

• CRISPRJWCHOI / CRISPR_toolkit
  CRISPR Indel, base edit analysis
  ☆10Updated 4 years ago
• tsailabSJ / circleseq
  ☆22Updated 6 years ago
• khuranalab / DeepMILO
  ☆7Updated 4 years ago
• julianeweller / MinsePIE
  Modelling insertion efficiency for Prime Insertion Experiments
  ☆13Updated 7 months ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆22Updated 6 months ago
• mirnylab / hiclib-legacy
  A legacy repository. Was replaced by distiller, cooler, and cooltools.
  ☆18Updated 4 years ago
• oicr-gsi / debarcer
  Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes
  ☆15Updated 3 years ago
• parklab / SCAN2
  SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
  ☆11Updated 3 months ago
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆23Updated 3 months ago
• Linlab-slu / TSSr
  ☆11Updated 3 weeks ago
• vagarwal87 / saluki_paper
  Saluki, a method to predict mRNA half-lives from sequence
  ☆22Updated 2 years ago
• dieterich-lab / JACUSA2
  New version of JACUSA -> 2.0
  ☆23Updated this week
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆21Updated last year
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆21Updated last year
• ribosomeprofiling / riboflow
  Pipeline for Ribosome Profiling Data
  ☆16Updated last year
• YangLab / RADAR
  RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.
  ☆18Updated last year
• CraigIDent / SpliSER
  Bioinformatic tool for Splice site Strength Estimation using RNA-seq
  ☆15Updated last year
• LUMC / fastqsplitter
  Splits fastq files evenly
  ☆18Updated 4 years ago
• bioinfo-biols / CIRI-long
  Circular RNA Identification for Nanopore Sequencing
  ☆18Updated 6 months ago
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆17Updated 2 years ago
• mdozmorov / ChIP-seq_notes
  Notes on ChIP-seq and other-seq-related tools
  ☆22Updated 4 months ago
• rajewsky-lab / find_circ2
  Find circRNAs in RNA-seq data.
  ☆14Updated 8 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆25Updated last year
• KCCG / rageseq
  RAGE-seq scripts
  ☆18Updated 3 years ago
• xryanglab / RiboMiner
  a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
  ☆14Updated 4 months ago
• Bushell-lab / Ribo-seq
  Analysis pipeline for Ribosome footprinting data
  ☆19Updated 2 months ago
• zhangwei2015 / IMonitor
  This script use to analyze the immune repertoire sequenced by high throughtput sequencing
  ☆24Updated 2 years ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated 6 months ago
• dejunlin / hicrep
  Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support
  ☆36Updated 9 months ago
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆13Updated 5 months ago