zhangwei2015 / IMonitor
This script use to analyze the immune repertoire sequenced by high throughtput sequencing
☆25Updated 3 years ago
Alternatives and similar repositories for IMonitor
Users that are interested in IMonitor are comparing it to the libraries listed below
Sorting:
- Fork of the Polysolver project☆31Updated 5 years ago
- HLA typing for Sanger Based Test☆17Updated 2 years ago
- Long read to rMATS☆31Updated 2 years ago
- ☆25Updated 5 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆44Updated last month
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆63Updated 9 months ago
- ☆58Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated last year
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆21Updated 3 weeks ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆89Updated last month
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 2 months ago
- Demultiplexes a fastq.☆44Updated 4 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 5 months ago
- MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data☆21Updated 2 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆38Updated 5 months ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆35Updated 3 years ago
- A comprehensive, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data☆17Updated 4 years ago
- Pipeline for Somatic Variant Calling with WES and WGS data☆21Updated last year
- A list of alternative splicing analysis resources☆43Updated last month
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated last year
- Long-read Isoform Quantification and Analysis☆39Updated last month
- Single cell Nanopore sequencing data for Genotype and Phenotype☆52Updated last week
- Define regions in the genome☆30Updated 3 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago