de-Boer-Lab / MAUDELinks
Mean Alterations Using Discrete Expression
☆14Updated last year
Alternatives and similar repositories for MAUDE
Users that are interested in MAUDE are comparing it to the libraries listed below
Sorting:
- TF analysis from epigenetic and Hi-C data☆19Updated 9 months ago
- ☆12Updated 5 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Updated 2 years ago
- epigenome analysis to rank transcription factors☆15Updated 6 years ago
- scover☆24Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Perturb-seq analysis package☆16Updated last year
- TRUST4 manuscript evaluation☆16Updated 3 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated last year
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- ☆17Updated last year
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- ☆16Updated 3 years ago
- ☆12Updated 4 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- S3norm ver2 + IDEAS epigenetic state / master peak list☆12Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 5 years ago
- Trans-association between HLA and TCR-CDR3☆19Updated 2 years ago
- ☆10Updated 3 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Updated 4 years ago