ma-compbio / MATCHALinks
multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning
☆29Updated 3 years ago
Alternatives and similar repositories for MATCHA
Users that are interested in MATCHA are comparing it to the libraries listed below
Sorting:
- ☆69Updated last month
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆92Updated 2 months ago
- ☆16Updated 3 years ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- a computational tool for analyzing single cell Hi-C data☆26Updated last year
- Toolkit for single-cell DNA methylation analysis.☆45Updated last month
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Updated 2 years ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆19Updated 4 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 3 months ago
- High-definition modeling of chromatin + transcriptomics data☆26Updated 8 months ago
- ☆26Updated 8 months ago
- Scripts + resources for analyzing combinatorial Hi-C data☆31Updated 6 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆34Updated 9 months ago
- ☆13Updated 4 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆29Updated 9 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 9 months ago
- Notes on single-cell Hi-C technologies, tools, and data☆86Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Updated 2 years ago
- ☆36Updated 3 years ago
- A python package for chromVAR☆32Updated 2 years ago
- mouse_fullStack_annotations☆12Updated 2 years ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated 2 months ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated last year
- ☆18Updated 3 years ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆46Updated 2 years ago
- Transcription Factor Enrichment Analysis☆36Updated last month
- Benchmark of GRNs using the GRETA pipeline☆30Updated 2 weeks ago