ma-compbio / MATCHALinks
multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning
☆29Updated 3 years ago
Alternatives and similar repositories for MATCHA
Users that are interested in MATCHA are comparing it to the libraries listed below
Sorting:
- ☆67Updated 3 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆88Updated 10 months ago
- a computational tool for analyzing single cell Hi-C data☆25Updated last year
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- ☆11Updated 4 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆44Updated last year
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆18Updated 3 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆27Updated 2 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 4 months ago
- ☆16Updated 3 years ago
- ☆18Updated 2 years ago
- A python package for chromVAR☆29Updated 2 years ago
- Notes on single-cell Hi-C technologies, tools, and data☆80Updated 10 months ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- Scripts + resources for analyzing combinatorial Hi-C data☆30Updated 5 years ago
- High-definition modeling of chromatin + transcriptomics data☆24Updated 4 months ago
- ☆26Updated 4 months ago
- Molecular interactions inference from single-cell multi-omics data☆27Updated 2 months ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- Benchmark of GRNs using the GRETA pipeline☆27Updated this week
- Toolkit for single-cell DNA methylation analysis.☆42Updated 2 weeks ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 4 months ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- ☆31Updated 5 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 9 months ago
- A method for analyzing scATAC-seq experiments.☆33Updated 2 months ago
- ☆35Updated 11 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆25Updated 2 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago