multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning
☆30Jul 20, 2022Updated 4 years ago
Alternatives and similar repositories for MATCHA
Users that are interested in MATCHA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- nuclear compartments, subcompartments, nuclear organization, Hi-C, autoencoder☆28Jul 5, 2024Updated 2 years ago
- The tools for your .cool's☆172Updated this week
- We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that inte…☆22Mar 17, 2024Updated 2 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆98Oct 29, 2025Updated last year
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆96Aug 29, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆10May 15, 2024Updated 2 years ago
- ☆18Mar 12, 2024Updated 2 years ago
- Notes on single-cell Hi-C technologies, tools, and data☆90Jun 29, 2026Updated 4 months ago
- Statistically Significant loops from HiChIP data☆50Apr 17, 2024Updated 2 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆12Jan 18, 2021Updated 5 years ago
- ☆10Oct 24, 2024Updated 2 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆48Apr 11, 2024Updated 2 years ago
- A collection of tools for Hi-C data analysis☆655Oct 24, 2026Updated last week
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆36Nov 25, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python NGS Repository☆10Apr 22, 2026Updated 6 months ago
- ☆19Nov 9, 2020Updated 5 years ago
- ☆23Jul 27, 2023Updated 3 years ago
- Discovery of communities in Pore-C concatemers☆16Feb 12, 2025Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆52Apr 12, 2019Updated 7 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆44Jan 31, 2024Updated 2 years ago
- ☆31Sep 28, 2019Updated 7 years ago
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆213May 19, 2018Updated 8 years ago
- A cool place to store your Hi-C☆248Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆13May 12, 2023Updated 3 years ago
- A self-contained repository of all code needed for SPRITE analysis☆22Jul 28, 2021Updated 5 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 5 years ago
- Genome-wide contact analysis using sklearn☆79Mar 23, 2024Updated 2 years ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆16Oct 6, 2025Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆78Jul 22, 2025Updated last year
- ☆25May 14, 2021Updated 5 years ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆104Mar 1, 2025Updated last year
- Python library for processing and visualizing Hi-C data☆20May 31, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Nov 9, 2020Updated 5 years ago
- FAN-C: Framework for the ANalysis of C-like data☆120Mar 13, 2024Updated 2 years ago
- chia pet analysis software☆25Jan 17, 2019Updated 7 years ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆22Apr 3, 2020Updated 6 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Sep 28, 2022Updated 4 years ago
- Epigenomics Program pipeline to analyze SHARE-seq data.☆23Mar 30, 2025Updated last year
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago