ma-compbio / MATCHALinks
multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning
☆29Updated 2 years ago
Alternatives and similar repositories for MATCHA
Users that are interested in MATCHA are comparing it to the libraries listed below
Sorting:
- ☆65Updated last week
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆43Updated last year
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆17Updated 3 years ago
- a computational tool for analyzing single cell Hi-C data☆25Updated last year
- ☆16Updated 2 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 2 months ago
- ☆11Updated 2 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆87Updated 8 months ago
- ☆26Updated last month
- ☆27Updated 2 years ago
- ☆19Updated 2 years ago
- Benchmark of GRNs using the GRETA pipeline☆24Updated 2 months ago
- ACTIONet single-cell analysis framework☆41Updated 8 months ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆26Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- Cooler demo using a Jupyter notebook Binder☆18Updated 4 years ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆53Updated 4 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 2 months ago
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- ☆11Updated 3 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆34Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- High-definition modeling of chromatin + transcriptomics data☆24Updated last month
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆25Updated 2 years ago
- Epigenomics Program pipeline to analyze SHARE-seq data.☆21Updated 2 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆42Updated last year