ma-compbio / MATCHALinks
multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning
☆29Updated 2 years ago
Alternatives and similar repositories for MATCHA
Users that are interested in MATCHA are comparing it to the libraries listed below
Sorting:
- a computational tool for analyzing single cell Hi-C data☆25Updated last year
- ☆66Updated 3 weeks ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- High-definition modeling of chromatin + transcriptomics data☆24Updated 2 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆86Updated 8 months ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆17Updated 3 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- ☆16Updated 2 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Molecular interactions inference from single-cell multi-omics data☆25Updated 3 weeks ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- ☆26Updated 2 months ago
- ☆11Updated 2 years ago
- ☆11Updated 3 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 2 months ago
- Cooler demo using a Jupyter notebook Binder☆18Updated 4 years ago
- ☆19Updated 2 years ago
- Benchmark of GRNs using the GRETA pipeline☆24Updated 3 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated last year
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 3 years ago
- ☆35Updated 9 months ago
- Toolkit for single-cell DNA methylation analysis.☆41Updated this week
- A python package for chromVAR☆28Updated 2 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆20Updated last year
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 2 months ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆43Updated last year
- Scripts + resources for analyzing combinatorial Hi-C data☆30Updated 5 years ago
- ACTIONet single-cell analysis framework☆41Updated 9 months ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated last year