Alternatives and similar repositories for CPU

Users that are interested in CPU are comparing it to the libraries listed below

• navinlabcode / ACT_paper
  Scripts used for the ACT paper
  ☆12Updated 4 years ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆13Updated 3 years ago
• henssenlab / TreeShapedRearrangements
  Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
  ☆15Updated 4 years ago
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• ijuric / MAPS
  ☆19Updated 2 years ago
• kundajelab / ataqc
  ☆17Updated 6 years ago
• guifengwei / ChromHMM_mESC_mm10
  Chromatin States Map in mouse embryonic stem cell
  ☆15Updated 7 years ago
• ay-lab / FitHiChIP
  Statistically Significant loops from HiChIP data
  ☆43Updated last year
• ren-lab / hic-pipeline
  ☆24Updated 4 years ago
• dekkerlab / matrix_paper
  Scripts and notebooks used in Akgol Oksuz et al. paper
  ☆11Updated 4 years ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆33Updated 3 years ago
• anlin00007 / OnTAD
  An Optimized Nested TAD caller for Hi-C data
  ☆22Updated 4 years ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• Henikoff / scCUT-Tag
  ☆17Updated 2 years ago
• mcgilldinglab / MATES
  A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data
  ☆28Updated 3 months ago
• DavidQuigley / WCDT_WGBS
  West Coast Dream Team Whole Genome Bisulfite Sequencing
  ☆15Updated 4 years ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆25Updated 11 months ago
• AlexandrovLab / SigProfilerTopography
  SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…
  ☆20Updated 5 months ago
• deWitLab / peakC
  Peak calling for 4C data
  ☆12Updated 7 years ago
• parklab / SCAN2
  SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
  ☆14Updated last month
• WRui / Post_Implantation
  ☆27Updated 4 years ago
• mcvickerlab / varCA
  Use an ensemble of variant callers to call variants from ATAC-seq data
  ☆23Updated 2 months ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated last year
• XiaoTaoWang / StripeCaller
  A toolkit for analyzing architectural stripes
  ☆20Updated 7 months ago
• ChongJenniferZhang / CLCA_WGS
  ☆25Updated last year
• gerstung-lab / MutationTimeR
  An R package to time somatic mutations
  ☆62Updated 4 years ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆18Updated 4 years ago
• deWitLab / GENOVA
  GENome Organisation Visual Analytics
  ☆15Updated 3 years ago
• HorvathLab / NGS
  Next-Gen Sequencing tools from the Horvath Lab
  ☆44Updated last week
• yupenghe / encode_dna_dynamics
  Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"
  ☆11Updated 4 years ago