cheehongsg / CPULinks
ChIA-PET Utilities
☆13Updated 3 years ago
Alternatives and similar repositories for CPU
Users that are interested in CPU are comparing it to the libraries listed below
Sorting:
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Updated 4 months ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago
- ☆18Updated 5 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- ☆17Updated 6 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- An Optimized Nested TAD caller for Hi-C data☆25Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆22Updated 4 months ago
- single-nucleus nanopore reads processing pipeline☆16Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- ☆29Updated 4 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated last month
- Micro DNA identification☆24Updated 4 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 5 months ago
- ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization☆29Updated 4 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- R package for large-scale CNV analysis from RNA-seq☆19Updated last year
- An R package to time somatic mutations☆65Updated 5 years ago
- Peak calling for 4C data☆13Updated 7 years ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Updated 3 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated last month
- chia pet analysis software☆25Updated 6 years ago
- ☆22Updated 3 years ago