ma-compbio / PEPLinks
☆14Updated 5 years ago
Alternatives and similar repositories for PEP
Users that are interested in PEP are comparing it to the libraries listed below
Sorting:
- ☆12Updated 5 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Updated 3 years ago
- JEME method for predicting enhancer targets☆11Updated 8 years ago
- functions and algorithms for single cell RNA-seq analyses☆12Updated 5 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Updated 4 years ago
- ☆15Updated 7 years ago
- Tutorial for the analysis of scRNA-seq data in R☆18Updated 7 years ago
- ☆21Updated 8 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- CircRNA testing and ploting R package☆10Updated 5 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆30Updated 2 years ago
- S3norm ver2 + IDEAS epigenetic state / master peak list☆12Updated 2 years ago
- Paired-seq☆15Updated last year
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆46Updated 8 years ago
- Differential Mutation Analysis☆11Updated 5 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- ☆12Updated 2 years ago
- ☆18Updated 9 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 5 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 6 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- ☆17Updated last year