Alternatives and similar repositories for PEP:

Users that are interested in PEP are comparing it to the libraries listed below

• epigen / cll-chromatin
  Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)
  ☆9Updated 7 years ago
• yiplabcuhk / JEME
  JEME method for predicting enhancer targets
  ☆11Updated 7 years ago
• WeiqiangZhou / BIRD
  Big data Regression for predicting DNase I hypersensitivity
  ☆30Updated 6 months ago
• wanwenzeng / ep2vec
  ☆22Updated 7 years ago
• jpiper / pyDNase
  Python module for the easy handling and analysis of DNase-seq data
  ☆37Updated 5 years ago
• edsgard / scphaser
  R package for haplotype phasing using single-cell RNA-seq data
  ☆13Updated 7 years ago
• kundajelab / bpnet-manuscript
  BPNet manuscript code.
  ☆11Updated 4 years ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• statbiophys / HLAGuessr
  ☆17Updated last month
• rajanil / msCentipede
  A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.
  ☆26Updated 8 years ago
• ma-compbio / CTCF-MP
  ☆11Updated 4 years ago
• yuelab / BUTLRTools
  ☆15Updated 7 years ago
• sellerslab / gemini
  GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens
  ☆15Updated 2 years ago
• maxwellsh / DIGDriver
  Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
  ☆24Updated 2 years ago
• weng-lab / BENGI
  ☆18Updated 2 years ago
• zhangyan32 / HiCPlus
  ☆31Updated 5 years ago
• joed3 / GTExV6PRareVariation
  Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript
  ☆18Updated 7 years ago
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated last year
• jiujiezz / tsnad
  Detecting somatic mutations and predicting tumor-specific neo-antigens
  ☆28Updated 3 years ago
• yakirr / sldp
  Signed LD profile regression code
  ☆17Updated this week
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• kundajelab / coda
  Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data
  ☆33Updated 7 years ago
• cxzhu / Paired-seq
  Paired-seq
  ☆14Updated 7 months ago
• oscar-franzen / adobo
  functions and algorithms for single cell RNA-seq analyses
  ☆12Updated 4 years ago
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆28Updated 4 years ago
• cfce / chilin
  ChIP-seq DC and QC Pipeline
  ☆34Updated 3 years ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆16Updated 2 years ago
• csoneson / rna_velocity_quant
  Evaluation of the effect of quantification choices on RNA velocity estimates
  ☆27Updated 3 years ago
• yanailab / moana
  Moana: Robust cell type classification of single-cell RNA-Seq data
  ☆24Updated 6 years ago
• yasinkaymaz / singleCellRNAseq_workshop
  Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.
  ☆16Updated 6 years ago