ma-compbio / PEPLinks
☆14Updated 5 years ago
Alternatives and similar repositories for PEP
Users that are interested in PEP are comparing it to the libraries listed below
Sorting:
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- ☆12Updated 5 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- ☆21Updated 8 years ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- CircRNA testing and ploting R package☆10Updated 5 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- JEME method for predicting enhancer targets☆11Updated 8 years ago
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Updated 11 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28Updated last year
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Updated 3 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- ☆12Updated 2 years ago
- Accompanying repository for GkmExplain paper☆23Updated 5 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- ☆18Updated 8 months ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆46Updated 7 years ago
- Paired-seq☆14Updated last year
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆11Updated 6 years ago
- ☆17Updated last year
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 4 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 6 years ago
- Big data Regression for predicting DNase I hypersensitivity☆31Updated last year
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Updated 6 years ago
- Automated marker-based annotation of cell types☆13Updated 3 years ago