☆14May 26, 2020Updated 5 years ago
Alternatives and similar repositories for PEP
Users that are interested in PEP are comparing it to the libraries listed below
Sorting:
- ☆14Jun 24, 2017Updated 8 years ago
- ☆12Nov 9, 2020Updated 5 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Sep 12, 2017Updated 8 years ago
- R package for high-throughput DNA shape predictions and feature encoding☆19Jul 1, 2021Updated 4 years ago
- ☆22Jun 5, 2017Updated 8 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning☆20Jul 23, 2020Updated 5 years ago
- Accompanying repository for GkmExplain paper☆23Aug 20, 2020Updated 5 years ago
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated last year
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 5 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- S3norm ver2 + IDEAS epigenetic state / master peak list☆12Sep 22, 2023Updated 2 years ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 3 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- R package with motifs for use with chromVAR☆29Nov 17, 2017Updated 8 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Jul 18, 2019Updated 6 years ago
- ☆13Jul 5, 2019Updated 6 years ago
- JEME method for predicting enhancer targets☆11Jul 15, 2017Updated 8 years ago
- Information Constraints on Auto-Encoding Variational Bayes☆11May 24, 2018Updated 7 years ago
- MAW: a suite on the computation and application of Minimal Absent Words☆16Nov 1, 2021Updated 4 years ago
- genomics toolbox that supports both graphical and command-line execution☆15Dec 3, 2024Updated last year
- Sample code for ldsc analyses in UKBB☆33May 4, 2023Updated 2 years ago
- Predicting regulatory DNA elements based on epigenomic signatures☆30Jun 26, 2024Updated last year
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 3 months ago
- Scripts for processing sci-RNA-seq/sci-ATAC-seq/sci-CAR reads processing☆15Dec 12, 2018Updated 7 years ago
- Effector and Perturbation Estimation Engine (EPEE) conducts differential analysis of transcription factor activity from gene expression d…☆16Oct 3, 2019Updated 6 years ago
- Training and using TFFM/PSSM/4-bits + DNA shape classifiers☆13Jun 11, 2018Updated 7 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Apr 13, 2021Updated 4 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Jan 19, 2023Updated 3 years ago
- This repository is retired software☆14Oct 29, 2015Updated 10 years ago
- ☆21Mar 20, 2017Updated 8 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆15May 4, 2021Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 6 years ago
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 7 years ago
- A tool for bigWig files.☆118May 23, 2018Updated 7 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆47Mar 26, 2025Updated 11 months ago