Novartis / piscesLinks
PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
☆30Updated 7 months ago
Alternatives and similar repositories for pisces
Users that are interested in pisces are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- v2.x of the microassembly based somatic variant caller☆23Updated 6 months ago
- ☆39Updated 7 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆43Updated 3 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆56Updated last week
- Isoform-level functional RNA-Seq analysis 🧬☆36Updated 2 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- Keep Me Around: Intron Retention Detection☆30Updated 7 years ago
- A tool for timing complex copy number gains in cancer.☆19Updated 2 months ago
- ☆30Updated 7 months ago
- Differential ATAC-seq toolkit☆28Updated 2 years ago
- interactive plots for differential expression analysis☆34Updated 7 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆73Updated last year
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 4 years ago
- A Python library to visualize and analyze long-read transcriptomes☆65Updated 3 weeks ago
- The Zavolab Automated RNA-seq Pipeline☆36Updated last week
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆45Updated 2 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- ☆33Updated 3 years ago
- ☆23Updated 3 weeks ago