PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
☆30Mar 20, 2026Updated 3 weeks ago
Alternatives and similar repositories for pisces
Users that are interested in pisces are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-origin batch effect remover method☆19Jan 31, 2023Updated 3 years ago
- ☆21Dec 26, 2025Updated 3 months ago
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 8 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 5 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- Analyzing RNA-Seq with approximate likelihood☆26Dec 13, 2020Updated 5 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Tools for generating and decoding error-correcting DNA barcodes☆15Feb 15, 2022Updated 4 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- ☆22Jun 9, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆20Aug 18, 2020Updated 5 years ago
- Simple pure Python SAM parser and objects for working with SAM records☆64Mar 20, 2026Updated 3 weeks ago
- Paint genomes with taxa-specific k-mer probabilities☆15Apr 4, 2022Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 4 months ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- A collection of CSV/TSV Utilities☆13Jun 2, 2020Updated 5 years ago
- k-mer similarity analysis pipeline☆22Nov 20, 2025Updated 4 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- linearize and simplify variation graphs using blocked partial order alignment☆62Mar 31, 2026Updated last week
- Building the compacted de Bruijn graph efficiently from references or reads.☆91Feb 26, 2026Updated last month
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆59Aug 17, 2024Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- ☆57Aug 11, 2022Updated 3 years ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- ☆24Apr 1, 2026Updated last week
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Mar 24, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- Deep learning-based structural variant filtering method☆39Nov 19, 2023Updated 2 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21May 22, 2023Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Sep 2, 2025Updated 7 months ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Oct 29, 2025Updated 5 months ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆86Mar 7, 2024Updated 2 years ago