Novartis / pisces
PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
☆29Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for pisces
- ☆33Updated 2 months ago
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 7 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆62Updated 4 years ago
- Builds a PEP from SRA or GEO accessions☆46Updated 2 months ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆42Updated last year
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- A rust framework to make using alevin-fry even simpler☆46Updated last month
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆22Updated 3 weeks ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆32Updated 3 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- IDR☆30Updated last year
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆31Updated 9 months ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆29Updated 6 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆54Updated 3 weeks ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 4 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆44Updated 5 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆24Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆49Updated 3 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆25Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆57Updated 8 months ago
- binned motif enrichment analysis and visualisation☆38Updated 3 weeks ago
- CLIP-seq Analysis of Multi-mapped reads☆28Updated 3 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆69Updated 7 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago