Oshlack / MINTIE
Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
☆35Updated 9 months ago
Alternatives and similar repositories for MINTIE:
Users that are interested in MINTIE are comparing it to the libraries listed below
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- a set of NGS pipelines☆24Updated last week
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- ☆23Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- ☆33Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 weeks ago
- ☆21Updated 3 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Long read to rMATS☆31Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated 2 weeks ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- ☆21Updated 10 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 weeks ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- Genomic Association Tester☆30Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 3 weeks ago
- Codes and Data for FFPEsig manuscript☆16Updated last year
- Third-generation fusion gene detection☆14Updated last year
- Merge fastq files split over lanes☆20Updated 7 years ago
- Repository for the Anczukow-Lab splicing pipeline☆16Updated 2 weeks ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- DriverPower☆26Updated 2 months ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated last week
- alternative splicing analysis pipeline☆18Updated 3 years ago