Bead-based single-cell atac processing
☆33Jul 6, 2026Updated 3 months ago
Alternatives and similar repositories for bap
Users that are interested in bap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Sep 23, 2024Updated 2 years ago
- ☆19Mar 8, 2023Updated 3 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 7 years ago
- Repository containing the code to reproduce the analyses contained in the MEFISTO manuscript☆13Jul 27, 2021Updated 5 years ago
- Tools for correcting single cell barcodes for various scATAC-seq techniques and creating fragment files and spltting BAM files per cluste…☆30Aug 12, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Pipeline for Universal Mapping of ATAC-seq☆29Sep 23, 2025Updated last year
- General functions for analyzing combinatorial indexing sequence data☆10Oct 1, 2019Updated 7 years ago
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated 2 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 3 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 3 years ago
- ☆21Dec 15, 2023Updated 2 years ago
- ☆14Sep 5, 2026Updated last month
- ☆12Oct 4, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Whole genome workflows☆13Nov 9, 2024Updated last year
- ☆62Mar 18, 2026Updated 7 months ago
- ChIA-PET Utilities☆13Dec 19, 2021Updated 4 years ago
- ☆15Nov 9, 2018Updated 7 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆54Dec 1, 2025Updated 10 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆468Feb 18, 2025Updated last year
- R package to detect breakpoints and assign somies to scATAC-seq data☆44Dec 1, 2025Updated 10 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- single cell analysis of treatment naive and treated human PDAC☆27May 27, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GREAT algorithm in Python☆17Oct 24, 2022Updated 4 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated 2 years ago
- Fast motif matching in R☆50Jan 24, 2024Updated 2 years ago
- Single-cell epigenomics analysis tools☆329Sep 12, 2026Updated last month
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Feb 26, 2019Updated 7 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆59May 5, 2021Updated 5 years ago
- Tools for processing UMI RNA-tag data☆133Apr 30, 2026Updated 6 months ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 5 years ago
- A toolkit for analyzing architectural stripes☆23Dec 1, 2024Updated last year
- Primer design for ATAC-qPCR☆13Jan 11, 2022Updated 4 years ago
- Mosaic single cell data integration using non-overlapping features☆40Sep 20, 2022Updated 4 years ago
- MASCoTE (Multiple Allele-specific Simulation of Copy-number Tumor Evolution) is a simulation framework to generate sequencing reads with …☆13Dec 3, 2020Updated 5 years ago
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 4 years ago
- Pathway-Level Single-Cell Functional Profiling of Individual Patient Samples☆11Aug 6, 2025Updated last year