innate2adaptive / decombinator
Decombinator v5: fast, error-correcting analysis of TCR repertoires
☆23Updated 5 months ago
Alternatives and similar repositories for decombinator:
Users that are interested in decombinator are comparing it to the libraries listed below
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- BAGEL software☆27Updated last year
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 3 years ago
- ☆47Updated 2 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 4 months ago
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆22Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 7 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated last year
- RiboPlotR package for Ribo-plot☆15Updated last year
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.☆21Updated last year
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- A RepSeq processing swiss-knife☆41Updated last year
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated last year
- ☆34Updated 5 years ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 8 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 3 months ago
- IDR☆31Updated 2 years ago
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆17Updated 6 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- model-based understanding of single-cell CRISPR screening☆23Updated 4 months ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆16Updated last month
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago