Decombinator: fast, error-correcting analysis of TCR repertoires
☆27Mar 20, 2026Updated last month
Alternatives and similar repositories for decombinator
Users that are interested in decombinator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python library for immune repertoire analysis☆17Feb 27, 2026Updated 2 months ago
- A RepSeq processing swiss-knife☆42Mar 29, 2024Updated 2 years ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 6 years ago
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆23Sep 10, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Higher level repo for aggregating all of Atlas workflow logic for Single Cell☆14Mar 31, 2026Updated last month
- ☆19Apr 20, 2025Updated last year
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆386Apr 22, 2026Updated last week
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆28Oct 1, 2022Updated 3 years ago
- [Deprecated, see README] Post-analysis of immune repertoire sequencing data☆144Mar 26, 2026Updated last month
- Zhou & Stephens (2014) GEMMA multivariate linear mixed model☆13Oct 24, 2020Updated 5 years ago
- A Julia package for extracting mutation signatures using topic models☆19Feb 23, 2022Updated 4 years ago
- Clonotype Neighbor Graph Analysis☆96Feb 12, 2026Updated 2 months ago
- ☆21Mar 20, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Ultrafast TCR clustering algorithm based on geometric isometry☆74Oct 16, 2024Updated last year
- 🛜 A lightweight immune repertoire browser☆27Dec 10, 2019Updated 6 years ago
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 8 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Mar 31, 2026Updated last month
- ☆12Jun 29, 2018Updated 7 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- ☆11Oct 25, 2022Updated 3 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- An R package to analyze single-cell V(D)J data☆29Nov 13, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tensor Switching Networks☆12Nov 2, 2017Updated 8 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- ☆38Nov 27, 2023Updated 2 years ago
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Apr 17, 2024Updated 2 years ago
- A collection of scripts used to recreate files and graphs used in the MMRF CoMMpass analysis.☆24Nov 23, 2025Updated 5 months ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Dec 4, 2020Updated 5 years ago
- phy-mer☆11Oct 12, 2017Updated 8 years ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆14May 26, 2020Updated 5 years ago
- Peptide library design☆23Sep 8, 2020Updated 5 years ago
- ☆31Jun 24, 2025Updated 10 months ago
- ☆12Nov 9, 2020Updated 5 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Code and analysis pipeline for NASC-seq.☆11Jun 14, 2022Updated 3 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆11Sep 25, 2017Updated 8 years ago